qiyunzhu / BeforePhylo
Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
☆10Updated 10 years ago
Alternatives and similar repositories for BeforePhylo:
Users that are interested in BeforePhylo are comparing it to the libraries listed below
- Genome alignment and synteny plots☆30Updated last year
- ☆22Updated 11 years ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- ☆12Updated last year
- ☆19Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 10 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆30Updated 9 months ago
- identify potential non-animal transcripts in animal transcriptomes☆11Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- Diploid genome assembly analysis tools☆14Updated 6 months ago
- Testing WGD placement along a species tree using gene trees.☆9Updated 6 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Multi-genome synteny block visualization tool☆33Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- A box of genomics tools☆21Updated 4 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago