qiyunzhu / BeforePhyloView external linksLinks
Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
☆11Sep 29, 2014Updated 11 years ago
Alternatives and similar repositories for BeforePhylo
Users that are interested in BeforePhylo are comparing it to the libraries listed below
Sorting:
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- ☆16Feb 20, 2024Updated last year
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated last year
- ☆18Dec 5, 2020Updated 5 years ago
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- ☆22Mar 25, 2014Updated 11 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year
- Code repository for the Global Ant Genomics Alliance☆16Jun 16, 2025Updated 8 months ago
- Sorting and subsampling phylogenomic datasets☆28Apr 9, 2025Updated 10 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated last year
- ☆44Sep 5, 2023Updated 2 years ago
- Detection of outlier genes and species in phylogenomics☆17Dec 14, 2025Updated 2 months ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 3 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 5 months ago
- Feature-aware Directed OrtholoG search☆14Dec 17, 2025Updated 2 months ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Jan 4, 2025Updated last year
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- SimPhy: A comprehensive simulator of gene family evolution☆33Jun 30, 2023Updated 2 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 8 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Feb 12, 2025Updated last year
- A phylogenetic profile analysis tool☆38Nov 18, 2025Updated 2 months ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Nov 26, 2025Updated 2 months ago
- Accurate Species TRee ALgorithm☆271Apr 1, 2024Updated last year
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 4 years ago
- R package for testing and visualizing gene list overlaps☆19Aug 22, 2016Updated 9 years ago
- ☆16Jun 25, 2025Updated 7 months ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- ☆21Dec 30, 2025Updated last month
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Jan 17, 2025Updated last year
- Topology weighting by iterative sampling of sub-trees☆85Jan 5, 2025Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year