Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
☆11Sep 29, 2014Updated 11 years ago
Alternatives and similar repositories for BeforePhylo
Users that are interested in BeforePhylo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 4 years ago
- shell tools for processing phylogenetic trees☆120Aug 30, 2022Updated 3 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆16Apr 11, 2026Updated 2 months ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Python version of PHLAWD☆23Oct 28, 2024Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Jan 21, 2026Updated 5 months ago
- Quartet Sampling method for phylogenetic branch support evaluation☆20Feb 26, 2024Updated 2 years ago
- ☆17Feb 16, 2026Updated 4 months ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆41Jun 29, 2026Updated last week
- ☆22Mar 25, 2014Updated 12 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated 3 weeks ago
- ☆19Dec 5, 2020Updated 5 years ago
- Sorting and subsampling phylogenomic datasets☆35Apr 9, 2025Updated last year
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Detection of outlier genes and species in phylogenomics☆19Dec 14, 2025Updated 6 months ago
- Feature-aware Directed OrtholoG search☆14Jun 16, 2026Updated 3 weeks ago
- Accurate Species TRee ALgorithm☆280Apr 1, 2024Updated 2 years ago
- ☆47Sep 5, 2023Updated 2 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 3 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 9 years ago
- A phylogenetic profile analysis tool☆38Jun 1, 2026Updated last month
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code repository for the Global Ant Genomics Alliance☆18Jun 16, 2025Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- ☆22Jun 24, 2026Updated 2 weeks ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- ☆22Jun 11, 2026Updated 3 weeks ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year