joepickrell / pophistory-tutorial
Tutorial on using popular tools for learning about population history
☆50Updated 6 years ago
Alternatives and similar repositories for pophistory-tutorial:
Users that are interested in pophistory-tutorial are comparing it to the libraries listed below
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆24Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Infer demographic history with the Moran model☆47Updated last month
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- ☆16Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago
- Scripts of population genomics analysis☆35Updated 6 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated this week
- ☆18Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆35Updated last year
- Joint inference of heterozygosity rates and runs of homozygosity☆14Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago