Tutorial on using popular tools for learning about population history
☆53Jul 18, 2018Updated 7 years ago
Alternatives and similar repositories for pophistory-tutorial
Users that are interested in pophistory-tutorial are comparing it to the libraries listed below
Sorting:
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- ☆13Apr 30, 2019Updated 6 years ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- ☆68Dec 5, 2022Updated 3 years ago
- Tools test whether admixture occurred and more☆222Sep 6, 2024Updated last year
- Tutorials on evolutionary genomics☆46Mar 11, 2022Updated 4 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- ☆13Sep 11, 2025Updated 6 months ago
- ☆44Sep 5, 2023Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- General tools for genomic analyses.☆387Feb 28, 2025Updated last year
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- ☆11Oct 23, 2019Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- ☆20Sep 10, 2020Updated 5 years ago
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated last year
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆172Aug 8, 2024Updated last year
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 10 months ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 3 months ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 9 months ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Feb 26, 2026Updated 3 weeks ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- MSMC2 Scripts☆28Sep 24, 2025Updated 5 months ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- testing where SNP are in the humain genom☆12Oct 24, 2016Updated 9 years ago