joepickrell / pophistory-tutorial
Tutorial on using popular tools for learning about population history
☆49Updated 6 years ago
Alternatives and similar repositories for pophistory-tutorial:
Users that are interested in pophistory-tutorial are comparing it to the libraries listed below
- ☆24Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Infer demographic history with the Moran model☆47Updated 2 weeks ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 11 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- ☆17Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆31Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Scripts of population genomics analysis☆35Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- ☆16Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 3 weeks ago
- Automated pipeline for running CoalHMM☆12Updated last year
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆16Updated last year
- Tools to convert to and from vcf format☆14Updated 7 years ago
- ☆42Updated 10 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- ☆22Updated 11 months ago