brettc / partitionfinderLinks
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
☆69Updated 4 years ago
Alternatives and similar repositories for partitionfinder
Users that are interested in partitionfinder are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83Updated 2 years ago
- Best-fit model selection☆85Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆86Updated last year
- ☆72Updated 4 months ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- Sydney Phylogenetics Workshop☆66Updated 3 months ago
- Phylogenetic penalized likelihood☆53Updated 4 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- shell tools for processing phylogenetic trees☆115Updated 3 years ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Using ggtree to build phylogenetic trees☆50Updated 11 months ago
- Recovering genes from targeted sequence capture data☆128Updated 4 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆22Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆75Updated last month
- Posterior summarisation in Bayesian phylogenetics☆65Updated last month
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Collection of scripts for bacterial genomics☆48Updated 5 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆43Updated last year
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆106Updated 2 weeks ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated last month
- ☆22Updated 6 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated 9 months ago