brettc / partitionfinder

Related projects ⓘ

Alternatives and complementary repositories for partitionfinder

• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated last month
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆75Updated 3 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆111Updated last week
• BioEasy / EasyCodeML
  EasyCodeML: A visual tool for analysis of selection using CodeML
  ☆77Updated last year
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆63Updated 10 months ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆34Updated 6 months ago
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆74Updated 9 months ago
• dportik / SuperCRUNCH
  A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…
  ☆42Updated 6 months ago
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆45Updated this week
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆62Updated 4 months ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• BenoitMorel / GeneRax
  ☆66Updated 9 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆56Updated this week
• ddarriba / modeltest
  Best-fit model selection
  ☆76Updated 7 months ago
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆41Updated 8 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆64Updated 6 years ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆43Updated 2 months ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆115Updated this week
• darwintreeoflife / darwintreeoflife.data
  Interim data for the Darwin Tree of Life Project
  ☆32Updated 4 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆91Updated 6 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆108Updated 5 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆103Updated 3 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆84Updated 2 years ago
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆91Updated 2 months ago
• MadsAlbertsen / multi-metagenome
  Scripts and tutorials on how to assemble individual microbial genomes from metagenomes
  ☆80Updated 8 years ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆21Updated 3 weeks ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆17Updated last year
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• caitiecollins / treeWAS
  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
  ☆94Updated 2 months ago