uym2 / TreeShrink
Implementation of the TreeShrink problem
☆41Updated 7 months ago
Alternatives and similar repositories for TreeShrink:
Users that are interested in TreeShrink are comparing it to the libraries listed below
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆47Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆65Updated 6 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆69Updated 4 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆31Updated last month
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆41Updated 3 weeks ago
- ☆71Updated last year
- Synteny Imager☆61Updated 8 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- ☆71Updated last month
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated 10 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Automatic evaluation of HGTs☆28Updated 2 months ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- Mobile Genetic Elements Retrieving Tool☆15Updated 3 years ago
- ☆22Updated 11 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆34Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆36Updated last month
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆36Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆48Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆61Updated 3 months ago