Implementation of the TreeShrink problem
☆56May 28, 2026Updated last month
Alternatives and similar repositories for TreeShrink
Users that are interested in TreeShrink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆46Sep 5, 2023Updated 2 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆249Updated this week
- Phylogenetic penalized likelihood☆57Jun 27, 2025Updated last year
- Visualing species tree from ASTRAL with gene tree discordance☆33May 13, 2025Updated last year
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Oct 20, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- ☆22Jun 11, 2026Updated 2 weeks ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/densitree☆30Jul 27, 2025Updated 11 months ago
- Calculate summary statistics and manipulate multiple sequence alignments☆98Jan 28, 2026Updated 5 months ago
- ☆16Apr 11, 2026Updated 2 months ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Robust identification of orthologous Synteny with the Orthology Index☆43Updated this week
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- Fast, accurate species tree estimation.☆13Aug 29, 2024Updated last year
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- Sorting and subsampling phylogenomic datasets☆34Apr 9, 2025Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 3 months ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 10 months ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Alignment-Based Sequence extraction☆15Feb 14, 2022Updated 4 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆33Oct 25, 2024Updated last year
- ☆20Apr 24, 2022Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated 8 months ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆469Jun 17, 2026Updated 2 weeks ago
- Extract methylation calls from long reads (ONT/ PacBio)☆24Apr 30, 2026Updated 2 months ago
- Recovering genes from targeted sequence capture data☆135Jan 9, 2026Updated 5 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago