Alternatives and similar repositories for MEMO

Users that are interested in MEMO are comparing it to the libraries listed below

• marbl / training
  Genome Assembly 102
  ☆17Updated 8 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 5 months ago
• ldenti / palss
  ☆23Updated 4 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated this week
• marschall-lab / strand-seq-graph-phasing
  ☆13Updated 7 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆22Updated last month
• lrobidou / KFC
  ☆19Updated 10 months ago
• MoinSebi / gfa2bin
  ☆28Updated 5 months ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated 3 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆24Updated 2 weeks ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆24Updated this week
• PacificBiosciences / portello
  Transfer HiFi read mappings from their own assembly contigs to a standard reference
  ☆28Updated last week
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated last year
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆34Updated 3 months ago
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆14Updated 2 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated last month
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 4 years ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆28Updated 3 months ago
• aljpetri / isONclust3
  De novo clustering of long transcript reads into genes
  ☆18Updated 3 weeks ago