StephenHwang / MEMOLinks
MEMO: MEM-based pangenome indexing for k-mer queries
☆18Updated last year
Alternatives and similar repositories for MEMO
Users that are interested in MEMO are comparing it to the libraries listed below
Sorting:
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
- Genome Assembly 102☆14Updated 5 months ago
- ☆22Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated this week
- Long-read aligner to pangenome graphs☆27Updated last year
- Phasing reads with secondary alignments☆20Updated 10 months ago
- base-level dotplots from PAF alignments☆27Updated 3 weeks ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- ☆12Updated 4 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated last week
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 6 months ago
- ☆18Updated last year
- ☆18Updated 7 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- ☆32Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- General purpose utility related to GAF files☆29Updated last month
- recompute GFA link overlaps☆25Updated 3 years ago
- Better Alignments with Translated HMMER☆23Updated this week
- AlfaPang builds pangenome graphs without alignments or references.☆12Updated 3 months ago
- Everything but the kitchen sink☆11Updated 8 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- ☆28Updated last year
- ☆25Updated 2 months ago
- JTK -- a regional diploid genome assembler☆25Updated 11 months ago