SJTU-CGM / PPanGLinks
a precise pangenome browser combining linear and graph-based pan-genome
☆12Updated last year
Alternatives and similar repositories for PPanG
Users that are interested in PPanG are comparing it to the libraries listed below
Sorting:
- Everything but the kitchen sink☆11Updated 11 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆24Updated 2 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- Phasing reads with secondary alignments☆21Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Genome Assembly 102☆17Updated 8 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 8 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 3 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 6 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- ☆13Updated 8 years ago
- ☆23Updated 4 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- base-level dotplots from PAF alignments☆28Updated 3 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated 3 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆28Updated 5 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- defusion☆14Updated 4 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago