SJTU-CGM / PPanGLinks
a precise pangenome browser combining linear and graph-based pan-genome
☆12Updated last year
Alternatives and similar repositories for PPanG
Users that are interested in PPanG are comparing it to the libraries listed below
Sorting:
- Everything but the kitchen sink☆11Updated 10 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Phasing reads with secondary alignments☆21Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- COsine SImilarity-based Genotyper using pangenomes☆24Updated this week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 7 months ago
- Genome Assembly 102☆17Updated 7 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- ☆13Updated 8 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 3 months ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- ☆23Updated 3 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated last year
- ☆28Updated 4 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 6 months ago
- base-level dotplots from PAF alignments☆28Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆21Updated 3 weeks ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- ☆16Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Updated last week
- Construct and Analyze the North American Vitis pangenome☆27Updated 4 months ago