a precise pangenome browser combining linear and graph-based pan-genome
☆13Jul 16, 2024Updated last year
Alternatives and similar repositories for PPanG
Users that are interested in PPanG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Mar 14, 2026Updated 2 weeks ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- Better Alignments with Translated HMMER☆25Mar 10, 2026Updated 2 weeks ago
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- ☆21Dec 13, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 2 weeks ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last month
- ☆18Jan 29, 2025Updated last year
- Complete assemblies of non-human primate genomes☆58May 20, 2025Updated 10 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆36Jan 14, 2024Updated 2 years ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 4 years ago
- tomato graph pangenome☆88Dec 13, 2022Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 5 months ago
- Pangenome Mutation-Annotated Networks☆38Feb 13, 2026Updated last month
- Identification of conserved non-coding sequences in plants☆38Feb 4, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- implicit pangenome graph☆98Updated this week
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆26Feb 9, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated last month