Wenfei-Xian / TIPPLinks
Telomere local assembly, Improved whole genome polish, and Plastid assembly
☆21Updated 3 months ago
Alternatives and similar repositories for TIPP
Users that are interested in TIPP are comparing it to the libraries listed below
Sorting:
- ☆20Updated this week
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated last month
- SINE annotation tool for plant genomes☆17Updated last year
- Domain based annotation of transposable elements☆20Updated 2 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 7 months ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- TD2☆14Updated 2 months ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- Construct and Analyze the North American Vitis pangenome☆24Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆27Updated 4 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Identification of conserved non-coding sequences in plants☆21Updated 3 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆21Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆15Updated last year
- ☆16Updated 2 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 3 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- ☆26Updated 11 months ago
- ☆16Updated 7 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago