Telomere local assembly, Improved whole genome polish, and Plastid assembly
☆22Apr 25, 2025Updated last year
Alternatives and similar repositories for TIPP
Users that are interested in TIPP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 29, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆13Sep 11, 2025Updated 7 months ago
- A organelle de novo genome assembly toolkit☆76Feb 22, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- OpenGL Powered Pretext Contact Map Viewer☆60Apr 27, 2026Updated last week
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- RepeatIdentifier☆72Mar 19, 2025Updated last year
- ☆41Oct 6, 2025Updated 7 months ago
- ☆18Apr 28, 2026Updated last week
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆101Apr 7, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- implicit pangenome graph☆101Apr 24, 2026Updated 2 weeks ago
- An efficient assembly tool for plant mitochondrial genome☆69May 31, 2024Updated last year
- ☆59Dec 12, 2023Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 9 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- ☆41Jun 8, 2023Updated 2 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 10 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- ☆37Feb 22, 2023Updated 3 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 10 months ago
- Transformer-based sequence correction method for genome assembly polishing☆101Mar 11, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- A battery of methylation tools for PacBio HiFi reads☆52Dec 2, 2025Updated 5 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- ☆92Apr 7, 2026Updated last month
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago