Wenfei-Xian / TIPPLinks
Telomere local assembly, Improved whole genome polish, and Plastid assembly
☆22Updated 7 months ago
Alternatives and similar repositories for TIPP
Users that are interested in TIPP are comparing it to the libraries listed below
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆23Updated last week
- SINE annotation tool for plant genomes☆18Updated last year
- Domain based annotation of transposable elements☆21Updated 2 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- ☆16Updated 11 months ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 5 months ago
- Construct and Analyze the North American Vitis pangenome☆26Updated 3 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated last month
- a fork of the gap-closing pipeline PBJelly☆15Updated 6 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 2 months ago
- ☆28Updated last year
- TD2☆25Updated last week
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆30Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- ☆16Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 7 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- ☆30Updated 8 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Consensus genome annotation using OMA☆27Updated 5 months ago