Wenfei-Xian / TIPP
Telomere local assembly, Improved whole genome polish, and Plastid assembly
☆18Updated 3 weeks ago
Alternatives and similar repositories for TIPP:
Users that are interested in TIPP are comparing it to the libraries listed below
- ☆17Updated last week
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 11 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- SINE annotation tool for plant genomes☆17Updated last year
- Genome alignment and synteny plots☆30Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week
- Some components that speed up and reduce resource cost for original ALLHiC☆13Updated 3 weeks ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 months ago
- Draw a dot plot from a paf alignment☆27Updated last week
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- ☆16Updated 3 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Consensus genome annotation using OMA☆23Updated 4 months ago
- Simple tools for working with Hi-C data☆17Updated 6 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Study of TE evolution in a population of genomes☆9Updated last year
- plot genome alignment synteny☆21Updated 4 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 6 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆12Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆11Updated 11 months ago
- ☆23Updated 7 months ago