TF-Chan-Lab / panGraphViewerLinks
Show pangenome graphs in an easy way
☆56Updated 2 years ago
Alternatives and similar repositories for panGraphViewer
Users that are interested in panGraphViewer are comparing it to the libraries listed below
Sorting:
- ☆63Updated last week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- ☆76Updated 5 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- TGS scaffolding☆46Updated 3 years ago
- ☆44Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated 10 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆101Updated last week
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Simple pileup-based variant caller☆91Updated 2 months ago
- Identification of transposable element families from pangenome polymorphisms☆48Updated last month
- A list of software for pangenomics☆118Updated last week
- A program for assessing the T2T genome continuity☆81Updated 2 weeks ago
- RepeatIdentifier☆66Updated 3 months ago
- A program to call variants from genome alignment☆81Updated 2 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆57Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆25Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆39Updated 3 months ago
- ☆32Updated 4 years ago
- SRF: Satellite Repeat Finder☆96Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago