Show pangenome graphs in an easy way
☆59Aug 7, 2025Updated 8 months ago
Alternatives and similar repositories for panGraphViewer
Users that are interested in panGraphViewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 7 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Pangenome-based genome inference☆163Dec 1, 2025Updated 4 months ago
- General purpose utility related to GAF files☆29Updated this week
- alignment to variation graph inducer☆158Mar 27, 2026Updated last week
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Mar 31, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- ☆42Feb 15, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 5 months ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 7 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆25Aug 17, 2024Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated last week
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆39Feb 15, 2025Updated last year
- Phased structural variant discovery in pangenomes☆40Updated this week
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆45Oct 13, 2024Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated last year
- ☆11Feb 20, 2024Updated 2 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Alignment-free pangenome browser and analysis toolkit☆68Updated this week
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆48Feb 23, 2021Updated 5 years ago