lh3 / minisvLinks
Lightweight mosaic/somatic SV caller for long reads (WIP)
☆29Updated 10 months ago
Alternatives and similar repositories for minisv
Users that are interested in minisv are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆18Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆21Updated 7 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Phased structural variant discovery in pangenomes☆36Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 7 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- ☆38Updated this week
- ☆45Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 7 months ago
- Tandem repeat genotyping with long reads☆30Updated 2 weeks ago
- Easy genomic regions for short-read variant calling☆44Updated last month
- General purpose utility related to GAF files☆29Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago