Lightweight mosaic/somatic SV caller for long reads (WIP)
☆37Oct 27, 2025Updated 11 months ago
Alternatives and similar repositories for minisv
Users that are interested in minisv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Dec 9, 2022Updated 3 years ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 5 months ago
- Copy number caller for long read data including SNV utilization☆72Mar 31, 2025Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆90Updated this week
- SV detection tool for nanopore sequence reads☆99Mar 25, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 2 months ago
- ☆21May 8, 2026Updated 5 months ago
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated last month
- Somatic structural variant caller for long-read data☆93Jun 30, 2026Updated 3 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated 3 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆51Oct 22, 2024Updated last year
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 3 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- bioinformatics toolkit in rust☆109Aug 16, 2026Updated last month
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month
- ☆12Apr 18, 2022Updated 4 years ago
- A complete diploid human genome☆161Aug 10, 2026Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆69May 26, 2026Updated 4 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- ☆22Oct 1, 2026Updated last week
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- implicit pangenome graph☆114Updated this week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Evaluating genome assemblies☆128Mar 3, 2026Updated 7 months ago
- Genome browser and variant annotation☆400Updated this week
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year