Lightweight mosaic/somatic SV caller for long reads (WIP)
☆39Oct 27, 2025Updated last year
Alternatives and similar repositories for minisv
Users that are interested in minisv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆112Jun 25, 2026Updated 4 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆17May 14, 2026Updated 5 months ago
- ☆21May 8, 2026Updated 5 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- SV detection tool for nanopore sequence reads☆99Mar 25, 2026Updated 7 months ago
- ☆34Jul 13, 2026Updated 3 months ago
- Pangenome-based structural variation caller☆44Oct 27, 2026Updated last week
- Toolkit for calling structural variants using short or long reads☆120Updated this week
- bioinformatics toolkit in rust☆110Aug 16, 2026Updated 2 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆91Oct 15, 2026Updated 2 weeks ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆97Aug 2, 2026Updated 3 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆47Oct 28, 2026Updated last week
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated 2 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated 3 months ago
- Somatic structural variant caller for long-read data☆93Jun 30, 2026Updated 4 months ago
- A tool for somatic structural variant calling using long reads☆181Jun 8, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 8 months ago
- Copy number caller for long read data including SNV utilization☆72Mar 31, 2025Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆51Oct 22, 2024Updated 2 years ago
- Alignment, quantification and fusion prediction from long RNA reads☆10Apr 11, 2022Updated 4 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- A complete diploid human genome☆162Oct 19, 2026Updated 2 weeks ago
- ☆134Oct 25, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- ☆22Updated this week
- Constructing a pangenome gene graph☆213Aug 11, 2025Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 3 years ago