cai91 / GPDLinks
This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
☆20Updated 4 years ago
Alternatives and similar repositories for GPD
Users that are interested in GPD are comparing it to the libraries listed below
Sorting:
- Prophage Activity Estimator☆26Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- ☆34Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆43Updated last week
- ☆56Updated last year
- ☆32Updated 5 months ago
- Unified Human Gut Virome Catalog☆32Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆18Updated 3 years ago
- ☆17Updated 5 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 9 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last week
- ☆37Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 3 months ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- KEGG Module Evaluation Tool☆30Updated last year
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆16Updated last month
- strain-level analysis tools☆39Updated 9 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆31Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- ☆20Updated 11 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago