cai91 / GPDLinks
This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
☆19Updated 5 years ago
Alternatives and similar repositories for GPD
Users that are interested in GPD are comparing it to the libraries listed below
Sorting:
- Prophage Activity Estimator☆31Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- ☆34Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- Predict prokaryotic host for phage metagenomic sequences☆54Updated last year
- ☆34Updated 4 months ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆38Updated 2 years ago
- ☆16Updated 5 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated last week
- Discover and annotate the virome☆58Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Updated this week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Updated 10 months ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 months ago
- ☆63Updated last year
- ☆18Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- An algorithm for clustering metagenomic sequences.☆41Updated last month
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago