cai91 / GPD
This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
☆19Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for GPD
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- ☆23Updated 8 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- ☆30Updated 10 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated last week
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- ☆16Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- ☆48Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- A simple program to classify the lifestyle of phages.☆16Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 9 months ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- KEGG Module Evaluation Tool☆26Updated 11 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated this week
- IslandPath standalone software☆31Updated last year
- ☆17Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆19Updated 9 months ago
- Bacterial GWAS analysis☆31Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆24Updated last month
- ☆36Updated 11 months ago