cai91 / GPD
This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
☆20Updated 4 years ago
Alternatives and similar repositories for GPD:
Users that are interested in GPD are comparing it to the libraries listed below
- ☆29Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- Prophage Activity Estimator☆26Updated 9 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated last year
- ☆31Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- ☆16Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- KEGG Module Evaluation Tool☆29Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆36Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 6 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆19Updated last year
- Discover and annotate the virome☆39Updated 5 months ago
- ☆51Updated last year
- Bacterial GWAS analysis☆37Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆24Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- MAG Circularization Method☆33Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 6 months ago