TingtZHENG / VirMinerLinks
Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
☆18Updated 5 years ago
Alternatives and similar repositories for VirMiner
Users that are interested in VirMiner are comparing it to the libraries listed below
Sorting:
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆32Updated 3 years ago
- ☆61Updated last year
- code repo for mobileOG-db☆41Updated last month
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- ☆18Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- ☆20Updated last year
- ☆54Updated 5 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- Prophage Activity Estimator☆29Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- This is the source code for ARGs-OAP v2.0 construction☆12Updated 6 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- ☆18Updated last year
- ☆33Updated 2 years ago
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 8 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 3 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago