Alternatives and similar repositories for VirMiner

Users that are interested in VirMiner are comparing it to the libraries listed below

• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated 2 years ago
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 3 years ago
• wandreopoulos / deeplasmid
  ☆20Updated 10 months ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆42Updated 2 years ago
• ziyewang / MetaBinner
  ☆56Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆32Updated 2 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆46Updated 5 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆42Updated last week
• putonti / virMine
  ☆18Updated 3 years ago
• caozhichongchong / arg_ranker
  ☆32Updated last month
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆40Updated 5 years ago
• joshuakirsch / pseudoR
  ☆17Updated 8 months ago
• allind / EukDetect
  ☆52Updated 2 weeks ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆53Updated 5 years ago
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆39Updated last month
• xiaole99 / ARGs-OAP-v2.0-development
  This is the source code for ARGs-OAP v2.0 construction
  ☆12Updated 5 years ago
• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆38Updated 2 years ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• LorMeBioAI / MBPD
  ☆16Updated 2 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated last year
• shufangwu / DeePhage
  A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning
  ☆24Updated last year
• hoelzer / pocp
  Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
  ☆26Updated 2 months ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆16Updated 4 years ago
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆20Updated 4 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆78Updated last month
• Microbial-Ecology-Group / AMRplusplus
  AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…
  ☆37Updated last week
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 7 months ago