KIT-IBG-5 / mdmcleanerLinks
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
☆24Updated 2 years ago
Alternatives and similar repositories for mdmcleaner
Users that are interested in mdmcleaner are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- ☆25Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Prophage Activity Estimator☆26Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- ☆32Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- ☆21Updated 4 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- ☆16Updated 4 years ago
- ☆24Updated 6 years ago
- ☆20Updated 9 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 5 months ago
- MAG Circularization Method☆33Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Phage-Host Interaction Search Tool☆27Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last month
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- viralFlye pipeline☆18Updated 9 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago