KIT-IBG-5 / mdmcleanerLinks
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
☆23Updated 2 years ago
Alternatives and similar repositories for mdmcleaner
Users that are interested in mdmcleaner are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ☆26Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 2 weeks ago
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- Prophage Activity Estimator☆29Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Phage-Host Interaction Search Tool☆29Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated 3 weeks ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago
- More scalable dereplication for metagenome assembled genomes☆75Updated 2 weeks ago
- ☆33Updated 2 years ago
- ☆24Updated 11 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- ☆14Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- ☆32Updated 2 months ago
- ☆33Updated 2 years ago
- Discover and annotate the virome☆56Updated 2 months ago
- Bacterial GWAS analysis☆46Updated 2 months ago