☆24Sep 26, 2025Updated 11 months ago
Alternatives and similar repositories for PIDE
Users that are interested in PIDE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆57Apr 27, 2026Updated 4 months ago
- A tool to assemble high-quality phages from metagenomes.☆27Sep 10, 2026Updated last week
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Discover and annotate the virome☆64Jun 10, 2026Updated 3 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- ☆15Dec 3, 2024Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆56Oct 12, 2023Updated 2 years ago
- Systematic search of all known anti-phage systems.☆186Sep 1, 2026Updated 3 weeks ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 5 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phage Annotation using Protein Structures☆175Sep 17, 2026Updated last week
- Detection of NCLDV signatures in 'omic data☆35Dec 28, 2025Updated 8 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 5 months ago
- The viral taxonomic assignment pipeline☆47Aug 31, 2026Updated 3 weeks ago
- ☆37Dec 6, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 15, 2026Updated 4 months ago
- viralVerify: viral contig verification tool☆77Feb 19, 2026Updated 7 months ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆231Sep 17, 2026Updated last week
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Jan 14, 2024Updated 2 years ago
- Repository for the paper A generative artificial intelligence approach for antibiotic optimization☆21Mar 26, 2026Updated 5 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Sep 12, 2026Updated last week
- Methods to determine sequence element (unitig) presence/absence☆28Mar 6, 2026Updated 6 months ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago