☆25Sep 26, 2025Updated last year
Alternatives and similar repositories for PIDE
Users that are interested in PIDE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FEDKEA: Fine-tuned ESM-2 and Distance-based KNN for Enzyme Annotation☆12Oct 31, 2025Updated last year
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆60Apr 27, 2026Updated 6 months ago
- A tool to assemble high-quality phages from metagenomes.☆28Sep 10, 2026Updated last month
- ☆15Dec 3, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Discover and annotate the virome☆65Jun 10, 2026Updated 4 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- A genome alignment and visualization system☆10Apr 30, 2024Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆57Oct 12, 2023Updated 3 years ago
- Phage Annotation using Protein Structures☆179Oct 13, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆42Apr 20, 2026Updated 6 months ago
- Binning Virus Genomes from Metagenomes☆78Jul 13, 2022Updated 4 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆60Updated this week
- tyPPing and other methods for detecting phage-plasmids☆14Dec 18, 2025Updated 10 months ago
- ☆14Dec 24, 2025Updated 10 months ago
- Detection of NCLDV signatures in 'omic data☆35Dec 28, 2025Updated 10 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Virus Identification☆29May 26, 2025Updated last year
- Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…☆11Nov 6, 2025Updated 11 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Sep 30, 2026Updated last month
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated last year
- The viral taxonomic assignment pipeline☆47Aug 31, 2026Updated 2 months ago
- Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes …☆24Updated this week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆176Mar 30, 2026Updated 7 months ago
- Kraken extension to identify viral contigs☆10Dec 4, 2020Updated 5 years ago
- ☆37Dec 6, 2023Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆39Oct 14, 2026Updated 2 weeks ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year