NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
☆28May 6, 2025Updated 11 months ago
Alternatives and similar repositories for taxid-changelog
Users that are interested in taxid-changelog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 11 months ago
- ☆20Sep 26, 2025Updated 6 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 3 months ago
- ☆25Feb 2, 2021Updated 5 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Mar 9, 2026Updated last month
- Virus Identification☆25May 26, 2025Updated 10 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 3 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 6 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Feb 26, 2026Updated last month
- ☆38Dec 6, 2023Updated 2 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆97May 20, 2025Updated 10 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆209Sep 22, 2023Updated 2 years ago
- SURPI☆86May 10, 2016Updated 9 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 7 months ago
- VAPiD: Viral Annotation and Identification Pipeline☆56May 29, 2024Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- ☆14Oct 14, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 6 months ago
- ☆44Nov 20, 2021Updated 4 years ago
- More scalable dereplication for metagenome assembled genomes☆79Mar 8, 2026Updated last month
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 2 months ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- A reference viral database (RVDB)☆27Nov 30, 2018Updated 7 years ago