NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
☆29May 15, 2026Updated 5 months ago
Alternatives and similar repositories for taxid-changelog
Users that are interested in taxid-changelog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Ultrafast identification of signature sequences in microbial genomes☆21Oct 9, 2026Updated last week
- ☆44Nov 20, 2021Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- ☆24Sep 26, 2025Updated last year
- ☆25Feb 2, 2021Updated 5 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 5 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 3 months ago
- Fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, comparison): 16 million viral contigs analyzed in less…☆102Sep 10, 2026Updated last month
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated 2 years ago
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 4 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆18Jul 10, 2018Updated 8 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆186Sep 9, 2026Updated last month
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 9 months ago
- Virus Identification☆29May 26, 2025Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 5 months ago
- ☆37Dec 6, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆65Sep 1, 2026Updated last month
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆26Sep 27, 2026Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- ☆30Mar 16, 2023Updated 3 years ago
- VAPiD: Viral Annotation and Identification Pipeline☆61May 29, 2024Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆47Sep 30, 2026Updated 2 weeks ago