Alternatives and similar repositories for viralrecall:

Users that are interested in viralrecall are comparing it to the libraries listed below

• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆20Updated 3 years ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆19Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆19Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆50Updated 4 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆37Updated 3 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆35Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated last year
• motu-tool / fetchMGs.pl
  ☆16Updated 4 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆35Updated 3 months ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆25Updated 2 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated last month
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆26Updated last month
• ziyewang / MetaBinner
  ☆48Updated 10 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 2 years ago
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆11Updated 3 years ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 9 months ago
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆19Updated 5 months ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆21Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆25Updated 11 months ago
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆48Updated 2 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆47Updated 6 months ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆31Updated 2 years ago
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆17Updated 4 months ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆27Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆40Updated 4 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆25Updated 2 months ago
• putonti / virMine
  ☆18Updated 2 years ago