Alternatives and similar repositories for viralrecall

Users that are interested in viralrecall are comparing it to the libraries listed below

• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆56Updated 2 months ago
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆43Updated 5 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆39Updated 3 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆41Updated last year
• ChrispinChaguza / RCandy
  RCandy: an R package for visualising homologous recombination events in bacterial genomes
  ☆25Updated 3 years ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆39Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆46Updated 2 months ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆34Updated last year
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆50Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated last month
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 9 months ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated 2 months ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆48Updated last week
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆41Updated last year
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• chengyuan / reago-1.1
  ☆20Updated 8 years ago
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆23Updated last month
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 8 months ago
• balabanmetin / uDance
  ☆43Updated last year
• ZhaoXM-Lab / metaMIC
  Assessing and Improving the quality of metagenomic assemblies
  ☆30Updated 3 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆33Updated last year
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆45Updated 5 months ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆32Updated 3 weeks ago
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆48Updated 3 years ago
• kussell-lab / mcorr
  Inferring bacterial recombination rates from large-scale sequencing datasets.
  ☆42Updated 2 years ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆43Updated 5 years ago