Detection of NCLDV signatures in 'omic data
☆35Dec 28, 2025Updated 2 months ago
Alternatives and similar repositories for viralrecall
Users that are interested in viralrecall are comparing it to the libraries listed below
Sorting:
- ☆16Updated this week
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- Virus Identification☆25May 26, 2025Updated 9 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Mar 3, 2026Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- ☆20Sep 26, 2025Updated 5 months ago
- ☆26Jun 20, 2023Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 6 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Aug 1, 2025Updated 7 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 8 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- Host prediction for phages☆26Nov 6, 2024Updated last year
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Fast sequence distance estimates☆26Mar 2, 2026Updated last week
- Systematic search of all known anti-phage systems.☆146Jan 22, 2026Updated last month
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Apr 14, 2020Updated 5 years ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- tiara – a tool for DNA sequence classification☆78Mar 2, 2024Updated 2 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- ☆18Apr 6, 2022Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- Methods to determine sequence element (unitig) presence/absence☆23Nov 24, 2025Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆282Nov 28, 2024Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year