chg60 / DEPhTLinks
Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
☆20Updated 6 months ago
Alternatives and similar repositories for DEPhT
Users that are interested in DEPhT are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- Prophage Activity Estimator☆26Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 8 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- ☆26Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆30Updated 2 years ago
- Phage-Host Interaction Search Tool☆27Updated 11 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆18Updated 6 months ago
- ☆21Updated 3 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- ☆16Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- ☆23Updated 4 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆28Updated 3 months ago
- Population genomics from metagenomes☆11Updated 9 months ago