biobakery / phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
☆132Updated last month
Alternatives and similar repositories for phylophlan:
Users that are interested in phylophlan are comparing it to the libraries listed below
- fast phage annotation program☆152Updated last week
- geNomad: Identification of mobile genetic elements☆207Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆205Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆142Updated 7 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆192Updated 7 months ago
- An updated pipeline for pangenome investigation☆275Updated 3 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆111Updated 3 weeks ago
- Find clustered hits from a BLAST search☆108Updated last month
- Bioinformatics program inStrain☆157Updated 8 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆134Updated 3 months ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆149Updated 8 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆201Updated last month
- DAS Tool☆143Updated 8 months ago
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆88Updated last year
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆106Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆149Updated this week
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆131Updated last year
- A user-friendly workflow for phylogenomics☆204Updated 2 weeks ago
- ☆127Updated 7 months ago
- Pan-genome wide association studies☆176Updated 8 months ago
- snipit: summarise snps relative to your reference sequence☆151Updated this week
- Download files from NCBI Entrez by accession☆114Updated 4 months ago
- BSR-Based Allele Calling Algorithm☆139Updated this week
- A toolbox for comparative genomics.☆100Updated 3 years ago
- Supporting code for uncultivated gut virus manuscript☆68Updated last year