biobakery / phylophlanLinks
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
☆154Updated 3 months ago
Alternatives and similar repositories for phylophlan
Users that are interested in phylophlan are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆150Updated 6 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆247Updated 2 months ago
- Similarity networks of biosynthetic gene clusters☆129Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆258Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Download files from NCBI Entrez by accession☆127Updated last year
- Processing pipeline for pan-genome visulization and exploration☆140Updated last year
- ☆145Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆227Updated 6 months ago
- A user-friendly workflow for phylogenomics☆219Updated last month
- fast phage annotation program☆176Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆219Updated 3 weeks ago
- Bioinformatics program inStrain☆174Updated 4 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆156Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 3 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 5 months ago
- Pan-genome wide association studies☆202Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated 2 years ago
- Find clustered hits from a BLAST search☆119Updated 9 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆186Updated this week
- CAMISIM: Simulating metagenomes and microbial communities☆213Updated this week
- Supporting code for uncultivated gut virus manuscript