biobakery / phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
☆128Updated this week
Related projects ⓘ
Alternatives and complementary repositories for phylophlan
- Pipeline for metabolic annotation of microbial genomes☆140Updated 4 months ago
- fast phage annotation program☆148Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆110Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆173Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆191Updated 2 weeks ago
- Bioinformatics program inStrain☆147Updated 6 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆145Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆194Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆178Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆124Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆147Updated 6 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆128Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆110Updated last week
- Pan-genome wide association studies☆150Updated 5 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆194Updated 2 weeks ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Find clustered hits from a BLAST search☆98Updated 3 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆107Updated last week
- Download files from NCBI Entrez by accession☆111Updated 2 months ago
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- DAS Tool☆140Updated 6 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆174Updated 3 months ago
- BSR-Based Allele Calling Algorithm☆134Updated 2 weeks ago
- An updated pipeline for pangenome investigation☆269Updated last month
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆103Updated this week
- ☆119Updated 5 months ago
- Similarity networks of biosynthetic gene clusters☆73Updated this week
- A user-friendly workflow for phylogenomics☆203Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- Processing pipeline for pan-genome visulization and exploration☆134Updated last year