adamhockenberry / bacphlipLinks
A python library for predicting phage lifestyle based on genome sequence
☆37Updated 2 years ago
Alternatives and similar repositories for bacphlip
Users that are interested in bacphlip are comparing it to the libraries listed below
Sorting:
- Unified Human Gut Virome Catalog☆37Updated last week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆55Updated 5 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆40Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated 3 weeks ago
- ☆33Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated 2 weeks ago
- Discover and annotate the virome☆53Updated last month
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Prophage Activity Estimator☆28Updated last year
- ☆38Updated last year
- ☆31Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated last year
- PHANOTATE: a gene caller for phages.☆78Updated 11 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated last month