detect temperate phage (active prophage) in assembled bacterial genome sequences
☆15Feb 10, 2022Updated 4 years ago
Alternatives and similar repositories for temperate-phage-active-prophage-detection
Users that are interested in temperate-phage-active-prophage-detection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆24Dec 16, 2024Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated 2 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 5 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated 6 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆28May 14, 2026Updated 5 months ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- ☆11Sep 16, 2020Updated 6 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 7 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 4 months ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Unified Human Gut Virome Catalog☆48May 29, 2026Updated 5 months ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 7 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- Locate antiviral defence systems in prokaryotic genomes☆78Oct 22, 2024Updated 2 years ago
- useful functions for ggplot☆18Oct 9, 2026Updated 3 weeks ago
- De novo VIral Genome Annotator☆26Jan 11, 2026Updated 9 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated last year
- ☆16Jun 18, 2020Updated 6 years ago
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago