Alternatives and similar repositories for temperate-phage-active-prophage-detection

Users that are interested in temperate-phage-active-prophage-detection are comparing it to the libraries listed below

• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆22Updated last year
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆41Updated last year
• cruizperez / FastAAI
  ☆24Updated 11 months ago
• yhg926 / MetaKSSD
  Instantaneous Metagenome Taxonomic Profiling with MetaKSSD
  ☆23Updated 2 months ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆20Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 2 months ago
• motu-tool / fetchMGs.pl
  ☆16Updated 5 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated last year
• WangLab-SCSIO / Prophage_Tracer
  Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
  ☆24Updated last year
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆58Updated 2 months ago
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆23Updated last month
• SushiLab / mVIRs
  ☆13Updated last year
• maurijlozano / ISCompare
  ISCompare, an opensource program to identify Differentially Located Insertion Sequences
  ☆13Updated last year
• putonti / virMine
  ☆18Updated 3 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• kangxiongbin / StrainXpress
  StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…
  ☆13Updated last year
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆22Updated last year
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆24Updated 2 years ago
• shiraz-shah / VFCs
  Code for de novo discovery of viral families in virome data
  ☆16Updated last year
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆18Updated last year
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated last year
• faylward / viralrecall
  Detection of NCLDV signatures in 'omic data
  ☆35Updated 2 weeks ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆33Updated last year
• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆32Updated 3 weeks ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆19Updated last year
• alexcritschristoph / soil_popgen
  Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
  ☆16Updated 5 years ago
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated last month
• ChrispinChaguza / RCandy
  RCandy: an R package for visualising homologous recombination events in bacterial genomes
  ☆25Updated 3 years ago