WtP: Phage identification via nextflow and docker or singularity
☆108Oct 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for What_the_Phage
Users that are interested in What_the_Phage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Dec 6, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Jul 12, 2022Updated 4 years ago
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆24Dec 16, 2024Updated last year
- Read alignment statistics for metagenomics☆411Oct 27, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Prophage Activity Estimator☆36May 30, 2024Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆43Apr 13, 2021Updated 5 years ago
- A python library for predicting phage lifestyle based on genome sequence☆44Aug 9, 2023Updated 3 years ago
- geNomad: Identification of mobile genetic elements☆341Oct 14, 2026Updated 2 weeks ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Sep 30, 2026Updated last month
- Gene cluster comparison figure generator☆661Updated this week
- SARS-CoV-2 workflow for nanopore sequence data☆42Aug 13, 2026Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆39Oct 14, 2026Updated 2 weeks ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆239Oct 21, 2026Updated last week
- Phage Annotation using Protein Structures☆179Oct 13, 2026Updated 3 weeks ago
- PHANOTATE: a gene caller for phages.☆95Dec 2, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated last month
- ☆29Aug 6, 2026Updated 2 months ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 8 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆62Jun 4, 2025Updated last year
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆102Oct 3, 2020Updated 6 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago