replikation / What_the_PhageLinks
WtP: Phage identification via nextflow and docker or singularity
☆105Updated this week
Alternatives and similar repositories for What_the_Phage
Users that are interested in What_the_Phage are comparing it to the libraries listed below
Sorting:
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- ☆129Updated last week
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Antibiotic resistance prediction in minutes☆111Updated 9 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 4 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆110Updated 5 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated last week
- A toolbox for comparative genomics.☆103Updated 4 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- DDBJ Fast Annotation and Submission Tool☆82Updated last week
- Microbiome classification pipeline☆65Updated 4 months ago
- Simple bacterial assembly and annotation pipeline☆77Updated last week
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- ☆83Updated 2 years ago
- Bioinformatics Tools☆89Updated 3 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago
- ☆75Updated this week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated last month
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago