replikation / What_the_Phage
WtP: Phage identification via nextflow and docker or singularity
☆105Updated this week
Alternatives and similar repositories for What_the_Phage:
Users that are interested in What_the_Phage are comparing it to the libraries listed below
- ☆125Updated 3 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆96Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆119Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 8 months ago
- Reorients assembled microbial sequences☆116Updated last month
- Making whole bacterial genome sequencing data analysis easy☆106Updated 2 weeks ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆139Updated last week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 11 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆125Updated last week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated last month
- SKESA assembler☆117Updated 7 months ago
- viralVerify: viral contig verification tool☆69Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- ☆82Updated last year
- Rapid determination of appropriate reference genomes.☆96Updated 3 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆80Updated last week
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆69Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆85Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆79Updated last week
- IS mapping software☆54Updated 3 years ago
- Create a tree using Mash distances☆163Updated last year
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆49Updated last year
- Prediction of prophages from bacterial genomes☆78Updated last year
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆83Updated this week
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆142Updated this week