A simple program to classify the lifestyle of phages.
☆17May 22, 2023Updated 3 years ago
Alternatives and similar repositories for PHACTS
Users that are interested in PHACTS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆18Nov 6, 2024Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18May 13, 2026Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆60Jun 4, 2025Updated 11 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated last week
- a comparative genome browser for bacteriophages☆21May 13, 2026Updated last week
- ☆21Nov 17, 2022Updated 3 years ago
- ☆33Jul 14, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Prophage Activity Estimator☆33May 30, 2024Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 3 months ago
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- Systematic search of all known anti-phage systems.☆168May 5, 2026Updated 2 weeks ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆195Apr 15, 2024Updated 2 years ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated last year
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Phage-Host Interaction Search Tool☆30Jul 8, 2024Updated last year
- ☆46Jun 27, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- Mining CRISPRs in Environmental Datasets☆125Feb 10, 2023Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 4 months ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- ☆13Feb 29, 2024Updated 2 years ago