deprekate / PHACTS
A simple program to classify the lifestyle of phages.
☆16Updated last year
Alternatives and similar repositories for PHACTS:
Users that are interested in PHACTS are comparing it to the libraries listed below
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- Prophage Activity Estimator☆26Updated 8 months ago
- ☆31Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 7 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 4 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- Throughput PhATE processing of draft or finished phage genomes☆14Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 3 months ago
- ☆28Updated this week
- Taxonomic classification of viruses at Order and Family level☆20Updated last year
- viralFlye pipeline☆18Updated 6 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆14Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆16Updated 2 weeks ago
- ☆37Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated this week
- Phage-Host Interaction Search Tool☆27Updated 7 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Comparisons of multiple different prophage predictions☆25Updated 2 years ago
- ☆19Updated 3 years ago
- ☆24Updated 6 years ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago