deprekate / PHACTSLinks
A simple program to classify the lifestyle of phages.
☆17Updated 2 years ago
Alternatives and similar repositories for PHACTS
Users that are interested in PHACTS are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Updated 2 years ago
- Prophage Activity Estimator☆31Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- ☆34Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Unified Human Gut Virome Catalog☆41Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated last week
- ☆38Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated 3 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- Phage-Host Interaction Search Tool☆29Updated last year
- Discover and annotate the virome☆58Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Updated 10 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 4 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Comparisons of multiple different prophage predictions☆26Updated this week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆36Updated 2 years ago
- ☆45Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated last week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 9 months ago