deprekate / PHACTSLinks
A simple program to classify the lifestyle of phages.
☆17Updated 2 years ago
Alternatives and similar repositories for PHACTS
Users that are interested in PHACTS are comparing it to the libraries listed below
Sorting:
- ☆33Updated last year
- Prophage Activity Estimator☆28Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆40Updated 2 years ago
- Phage-Host Interaction Search Tool☆29Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated 11 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- Unified Human Gut Virome Catalog☆38Updated last week
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago
- ☆38Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 4 years ago
- Discover and annotate the virome☆53Updated last month
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆45Updated 2 years ago
- ☆31Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆35Updated 7 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated 3 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆21Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 7 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month