deprekate / PHACTSLinks
A simple program to classify the lifestyle of phages.
☆17Updated 2 years ago
Alternatives and similar repositories for PHACTS
Users that are interested in PHACTS are comparing it to the libraries listed below
Sorting:
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- ☆33Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- Prophage Activity Estimator☆29Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆43Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- Unified Human Gut Virome Catalog☆39Updated last month
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- ☆45Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Phage-Host Interaction Search Tool☆29Updated last year
- Discover and annotate the virome☆56Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated this week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- ☆38Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 3 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last month
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆70Updated 3 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated last month