☆20Nov 17, 2022Updated 3 years ago
Alternatives and similar repositories for PhANNs
Users that are interested in PhANNs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a comparative genome browser for bacteriophages☆21Updated this week
- RBPseg: A Tool for Tail Fiber Structure Prediction☆16Jan 27, 2026Updated 5 months ago
- ☆11Jul 3, 2022Updated 4 years ago
- Detection of phage RBPs based on protein domains and machine learning☆34Feb 5, 2025Updated last year
- Pairwise machine learning models for phage-host interaction prediction☆22Jun 23, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 5 months ago
- ☆37Dec 6, 2023Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago
- PHANOTATE: a gene caller for phages.☆92Dec 2, 2024Updated last year
- ☆33Jul 14, 2021Updated 5 years ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆37Updated this week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Jul 3, 2026Updated 2 weeks ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 6 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆42Aug 9, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 3 months ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆21Sep 2, 2025Updated 10 months ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- Desktop tool for microbial genome annotation and gene detection☆13Jun 22, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Phage Annotation using Protein Structures☆167Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- ☆12Jun 24, 2026Updated 3 weeks ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago