☆21Nov 17, 2022Updated 3 years ago
Alternatives and similar repositories for PhANNs
Users that are interested in PhANNs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a comparative genome browser for bacteriophages☆21Apr 13, 2026Updated last week
- ☆11Jul 3, 2022Updated 3 years ago
- Pairwise machine learning models for phage-host interaction prediction☆21Jun 23, 2024Updated last year
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 2 months ago
- ☆38Dec 6, 2023Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago
- Detection of phage RBPs based on protein domains and machine learning☆32Feb 5, 2025Updated last year
- PHANOTATE: a gene caller for phages.☆85Dec 2, 2024Updated last year
- ☆33Jul 14, 2021Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 10 months ago
- Phage Annotation using Protein Structures☆158Apr 10, 2026Updated last week
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Feb 3, 2026Updated 2 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 3 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆19Sep 2, 2025Updated 7 months ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Desktop tool for microbial genome annotation and gene detection☆13Jun 22, 2021Updated 4 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Apr 6, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Prophage Activity Estimator☆32May 30, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated last year
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year