SushiLab / mVIRsLinks
☆13Updated last year
Alternatives and similar repositories for mVIRs
Users that are interested in mVIRs are comparing it to the libraries listed below
Sorting:
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago
- ☆16Updated 4 years ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- ☆17Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- Microbial agile accurate SNP Typer☆29Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Drug Resistance Prediction with Reference Graphs☆21Updated last year
- ☆14Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆12Updated last year
- Variant call verification☆16Updated 3 weeks ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆20Updated 2 months ago
- finding conserved regions in highly diverse genomes☆15Updated this week
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year