Alternatives and similar repositories for mVIRs

Users that are interested in mVIRs are comparing it to the libraries listed below

• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆19Updated 3 years ago
• NancyZxll / temperate-phage-active-prophage-detection
  detect temperate phage (active prophage) in assembled bacterial genome sequences
  ☆14Updated 3 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• mathjeff / Mapper
  Genomic sequence aligner
  ☆26Updated this week
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆22Updated 2 years ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆20Updated 9 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated last month
• genomic-medicine-sweden / TRANA
  A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
  ☆16Updated last week
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 9 months ago
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆15Updated 3 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated 2 weeks ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 4 months ago
• CAMI-challenge / second_challenge_evaluation
  Repository for codes, analyses and visualizations for the CAMI II challenges
  ☆11Updated 2 years ago
• Xiangyang1984 / Gcluster
  A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
  ☆17Updated last year
• BioSina / Panakeia
  Prokaryotic Pangenome Analysis
  ☆24Updated 3 years ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆26Updated 3 weeks ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆34Updated 2 months ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 7 months ago
• cruizperez / FastAAI
  ☆24Updated 7 months ago
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 4 years ago
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆25Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago