SushiLab / mVIRsLinks
☆13Updated last year
Alternatives and similar repositories for mVIRs
Users that are interested in mVIRs are comparing it to the libraries listed below
Sorting:
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆17Updated 2 weeks ago
- ☆20Updated 2 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Updated 3 weeks ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated last week
- transposable element typing pipeline☆19Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- snapper☆13Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 9 months ago
- Better Alignments with Translated HMMER☆24Updated this week
- ☆43Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Genomic sequence aligner☆33Updated 2 months ago
- ☆23Updated 2 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 10 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 months ago
- A novel method for sequence similarity estimation☆28Updated last year