Code for de novo discovery of viral families in virome data
☆16Jun 20, 2024Updated 2 years ago
Alternatives and similar repositories for VFCs
Users that are interested in VFCs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Prophage Activity Estimator☆36May 30, 2024Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago
- ☆16Jun 18, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- ☆35Oct 6, 2025Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆24Dec 16, 2024Updated last year
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆18Mar 16, 2026Updated 7 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- Investigating the gut virus communities associated with colon cancer.☆11Sep 20, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆42Sep 20, 2026Updated last month
- Integrative virome pipeline☆14Nov 4, 2024Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated 2 months ago
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 3 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆17Mar 25, 2022Updated 4 years ago
- Discover and annotate the virome☆65Jun 10, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆13Apr 25, 2022Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆44Aug 9, 2023Updated 3 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- ☆15Sep 15, 2022Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆78Aug 13, 2026Updated 2 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 5 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆60Oct 29, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated last month
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 3 months ago
- Metagenomics-related extended functionalities to samtools☆23Sep 2, 2026Updated 2 months ago
- ☆35Jun 26, 2025Updated last year
- Combining de novo and reference-guided assembly with Scaffold_builder☆20May 30, 2026Updated 5 months ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago