shiraz-shah / VFCsView external linksLinks
Code for de novo discovery of viral families in virome data
☆16Jun 20, 2024Updated last year
Alternatives and similar repositories for VFCs
Users that are interested in VFCs are comparing it to the libraries listed below
Sorting:
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆40Aug 9, 2023Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 9 months ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated last year
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 3 weeks ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- ☆15May 22, 2025Updated 8 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 4 months ago
- vaginal microbiota☆12Jan 21, 2025Updated last year
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆13Feb 6, 2026Updated last week
- Assign taxonomic ranks based on evolutionary divergence.☆23Mar 28, 2022Updated 3 years ago
- ☆14Apr 30, 2020Updated 5 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- ☆25Feb 2, 2021Updated 5 years ago
- Prophage Activity Estimator☆31May 30, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆54Sep 17, 2024Updated last year
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- ☆13Jun 6, 2024Updated last year
- ☆16Jun 18, 2020Updated 5 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 5 years ago
- Detection of NCLDV signatures in 'omic data☆35Dec 28, 2025Updated last month
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆33Jun 18, 2023Updated 2 years ago
- ☆34Oct 6, 2025Updated 4 months ago
- MetaCarvel: A scaffolder for metagenomes☆14Sep 17, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 2 months ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 8 years ago
- Pipeline to run qiime2 with snakemake☆16Apr 17, 2020Updated 5 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago