Alternatives and similar repositories for viralclust:

Users that are interested in viralclust are comparing it to the libraries listed below

• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆26Updated 2 weeks ago
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated 3 weeks ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 8 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 10 months ago
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆38Updated 5 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆33Updated last month
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆33Updated 3 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆27Updated 5 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆37Updated 2 weeks ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 11 months ago
• rrwick / Verticall
  Recombination-free trees
  ☆57Updated this week
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆36Updated last year
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆23Updated 2 weeks ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆39Updated 5 months ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆29Updated last month
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆26Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆48Updated 8 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆50Updated 8 months ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆29Updated last year
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆20Updated last year
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 8 months ago
• putonti / virMine
  ☆18Updated 2 years ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆18Updated 7 months ago