Prophage Activity Estimator
☆33May 30, 2024Updated last year
Alternatives and similar repositories for PropagAtE
Users that are interested in PropagAtE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Virus Identification By iteRative ANnoTation☆194Apr 15, 2024Updated 2 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Feb 3, 2026Updated 2 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated last month
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆35Dec 20, 2023Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆80Jul 17, 2023Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 3 months ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- A community effort to create a shared resource for HMM-based RdRp discovery☆14Feb 13, 2026Updated 2 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 3 weeks ago
- ☆38Dec 6, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆288Nov 28, 2024Updated last year
- Variational autoencoder for metagenomic binning☆322Updated this week
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- ☆17Mar 11, 2024Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated last month
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Jul 12, 2022Updated 3 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆148Apr 21, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 3 months ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆73Jul 13, 2022Updated 3 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Jul 2, 2019Updated 6 years ago