AnantharamanLab / PropagAtELinks
Prophage Activity Estimator
☆29Updated last year
Alternatives and similar repositories for PropagAtE
Users that are interested in PropagAtE are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ☆33Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- ☆38Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 2 weeks ago
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- ☆26Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- ☆22Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 4 years ago
- ☆16Updated 7 months ago
- ☆20Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- ☆32Updated 2 months ago
- ☆18Updated 3 years ago
- ☆24Updated 7 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year