guanxiangliang / liang2019Links
Step-wise assembly of the neonatal virome modulated by breast feeding.
☆11Updated 4 years ago
Alternatives and similar repositories for liang2019
Users that are interested in liang2019 are comparing it to the libraries listed below
Sorting:
- ☆11Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆41Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated last month
- scripts for microbiome analysis☆11Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆14Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Discover and annotate the virome☆49Updated last week
- ☆18Updated 3 years ago
- viralComplete: BLAST-based viral completeness verification☆25Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- ☆22Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆20Updated 8 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago