guanxiangliang / liang2019Links
Step-wise assembly of the neonatal virome modulated by breast feeding.
☆11Updated 4 years ago
Alternatives and similar repositories for liang2019
Users that are interested in liang2019 are comparing it to the libraries listed below
Sorting:
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- ☆11Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆19Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- MAG Circularization Method☆32Updated 3 weeks ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Code for de novo discovery of viral families in virome data☆15Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- ☆20Updated 8 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- ☆42Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated this week
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- scripts for microbiome analysis☆11Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago