guanxiangliang / liang2019
Step-wise assembly of the neonatal virome modulated by breast feeding.
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for liang2019
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- ☆11Updated 9 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆25Updated 3 months ago
- Code for de novo discovery of viral families in virome data☆14Updated 5 months ago
- ☆21Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- MAG Circularization Method☆33Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- ☆16Updated 4 years ago
- ☆25Updated 2 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 7 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆21Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- transposable element typing pipeline☆16Updated 8 months ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 2 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago