AnantharamanLab / VIBRANT

Related projects ⓘ

Alternatives and complementary repositories for VIBRANT

• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆124Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆110Updated last year
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆147Updated 6 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆148Updated this week
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆108Updated last week
• cmks / DAS_Tool
  DAS Tool
  ☆140Updated 6 months ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆103Updated last week
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆174Updated 5 months ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆224Updated last year
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆127Updated 8 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆150Updated 5 months ago
• fwhelan / coinfinder
  A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
  ☆97Updated last year
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆128Updated this week
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆110Updated last week
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆193Updated this week
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆128Updated this week
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆134Updated 2 weeks ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆194Updated 3 weeks ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆97Updated 3 years ago
• jessieren / VirFinder
  VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
  ☆134Updated 4 years ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆66Updated last year
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆130Updated last year
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆125Updated 3 years ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆140Updated 4 months ago
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆178Updated 10 months ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆149Updated last week
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆134Updated last year
• rrwick / Perfect-bacterial-genome-tutorial
  ☆119Updated 5 months ago
• klebgenomics / Kleborate
  ☆116Updated this week