Alternatives and similar repositories for VIBRANT

Users that are interested in VIBRANT are comparing it to the libraries listed below

• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆146Updated last month
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆126Updated this week
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆119Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆115Updated 2 months ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆135Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆143Updated last month
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆248Updated 5 months ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆166Updated last week
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆141Updated last month
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆211Updated 3 weeks ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆158Updated this week
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆298Updated 2 months ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆127Updated last week
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆132Updated last week
• gbouras13 / pharokka
  fast phage annotation program
  ☆162Updated 3 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆206Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆145Updated last month
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆213Updated this week
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated last week
• klebgenomics / Kleborate
  ☆125Updated this week
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆195Updated 11 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆225Updated 2 years ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆123Updated 6 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆147Updated last year
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆85Updated last year
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆243Updated last year
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆205Updated 9 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆223Updated 2 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆138Updated last year
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆195Updated 3 months ago