AnantharamanLab / VIBRANTLinks
Virus Identification By iteRative ANnoTation
☆171Updated last year
Alternatives and similar repositories for VIBRANT
Users that are interested in VIBRANT are comparing it to the libraries listed below
Sorting:
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆153Updated 3 months ago
- Bioinformatics program inStrain☆174Updated 2 months ago
- DAS Tool☆154Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆198Updated 6 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 4 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆138Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆158Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆219Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆151Updated last month
- A user-friendly workflow for phylogenomics☆217Updated this week
- BSR-Based Allele Calling Algorithm☆149Updated last week
- fast phage annotation program☆171Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆75Updated 7 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆237Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆219Updated 4 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆135Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 4 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆211Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 3 months ago
- Pan-genome wide association studies☆200Updated last year
- ☆140Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆73Updated last year
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆102Updated 4 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆102Updated last year
- ☆129Updated 3 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆89Updated this week