AnantharamanLab / VIBRANT
Virus Identification By iteRative ANnoTation
☆148Updated 5 months ago
Related projects: ⓘ
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆116Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆105Updated 10 months ago
- Pan-genome wide association studies☆147Updated 3 months ago
- BSR-Based Allele Calling Algorithm☆129Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆164Updated 3 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆126Updated 6 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆186Updated 2 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆94Updated this week
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆76Updated 3 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆92Updated 10 months ago
- fast phage annotation program☆144Updated 2 months ago
- A user-friendly workflow for phylogenomics☆197Updated this week
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆116Updated 11 months ago
- Bioinformatics program inStrain☆137Updated 4 months ago
- DAS Tool☆137Updated 4 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆106Updated last month
- Pipeline for metabolic annotation of microbial genomes☆138Updated 2 months ago
- Metagenomic classification of long-read sequencing data☆55Updated this week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆98Updated this week
- Processing pipeline for pan-genome visulization and exploration☆132Updated 11 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆77Updated 10 months ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆96Updated 3 years ago
- ☆113Updated this week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆127Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆121Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆165Updated last week
- geNomad: Identification of mobile genetic elements☆187Updated 3 weeks ago
- snipit: summarise snps relative to your reference sequence☆141Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆167Updated last month
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆125Updated 3 weeks ago