Alternatives and similar repositories for viromescan

Users that are interested in viromescan are comparing it to the libraries listed below

• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated this week
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆18Updated 10 months ago
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 7 months ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆20Updated last year
• Xiangyang1984 / Gcluster
  A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
  ☆18Updated 2 weeks ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆14Updated 7 months ago
• viralInformatics / VIGA
  ☆14Updated 6 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated 2 years ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆24Updated 2 years ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• xbiome / StrainPanDA
  A method for reconstruction of subspecies composition and functional profiles from metagenomic data
  ☆13Updated last year
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• mbhall88 / tbpore
  Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
  ☆12Updated last year
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• LoadStar822 / Chimera
  Chimera: A Versatile Metagenomic Classification Tool
  ☆19Updated last week
• thh32 / Protologger
  Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
  ☆15Updated 3 weeks ago
• erinyoung / roundabout
  Finding regions of similarity between plasmids
  ☆16Updated 3 years ago
• thackl / proovframe
  frame-shift correction for long-read (meta)genomics
  ☆33Updated 2 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• chg60 / phammseqs
  Assort phage protein sequences into phamilies using MMseqs2
  ☆11Updated last year
• kangxiongbin / StrainXpress
  StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…
  ☆13Updated last year
• rpetit3 / pasty
  A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
  ☆13Updated last year
• SushiLab / mVIRs
  ☆13Updated last year
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated last month
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated 2 months ago
• genomic-medicine-sweden / TRANA
  A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
  ☆16Updated last week