shenwei356 / ictv-taxdumpLinks
NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
☆21Updated last month
Alternatives and similar repositories for ictv-taxdump
Users that are interested in ictv-taxdump are comparing it to the libraries listed below
Sorting:
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆20Updated 2 months ago
- Drug Resistance Prediction with Reference Graphs☆21Updated last year
- Visualize microbial evolution at the SNP level!☆14Updated 3 weeks ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- viralFlye pipeline☆18Updated 9 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- Variant call verification☆16Updated 3 weeks ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆34Updated 3 months ago
- ☆16Updated 2 months ago
- strain-level analysis tools☆37Updated 7 months ago
- ☆21Updated 4 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 11 months ago
- ☆16Updated 4 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 4 months ago
- Clermont PCR method In-Silico☆21Updated last year