shenwei356 / ictv-taxdumpLinks
NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
☆21Updated 3 months ago
Alternatives and similar repositories for ictv-taxdump
Users that are interested in ictv-taxdump are comparing it to the libraries listed below
Sorting:
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 3 months ago
- Remove human reads from a sequencing run☆40Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Find Unique genomic Regions☆30Updated this week
- Read contamination removal☆25Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆19Updated 4 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- finding conserved regions in highly diverse genomes☆15Updated 2 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- ☆44Updated last month
- Genome size estimation from long read overlaps☆59Updated last week
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆41Updated last week
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆17Updated 2 weeks ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago