NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
☆22May 3, 2025Updated last year
Alternatives and similar repositories for ictv-taxdump
Users that are interested in ictv-taxdump are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 15, 2026Updated 3 months ago
- ☆35Oct 6, 2025Updated 10 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 8 months ago
- viralVerify: viral contig verification tool☆76Feb 19, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated 2 years ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆38Aug 3, 2026Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Aug 10, 2026Updated last week
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 3 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- viral Host UnveiLing Kit (vHULK)☆15May 15, 2025Updated last year
- ☆24Sep 26, 2025Updated 10 months ago
- Fungal Genome Mapping Pipeline☆19Jun 9, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python bindings for the TaxonKit library☆43Aug 3, 2026Updated 2 weeks ago
- Convert genbank files to a swath of other formats☆32Aug 9, 2026Updated last week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated 10 months ago
- ☆18Oct 7, 2024Updated last year
- A Gene Finder framework for Julia.☆15Jan 16, 2026Updated 7 months ago
- Synteny-enhanced annotation of Bacteriophage genes☆18Updated this week
- ☆11Feb 16, 2021Updated 5 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 9 months ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A sequencing simulator☆226May 20, 2026Updated 2 months ago
- ☆24May 13, 2024Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Aug 10, 2026Updated last week
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago