deng-lab / viroprofilerLinks
A containerized bioinformatics pipeline for viral metagenomic data analysis
☆37Updated last year
Alternatives and similar repositories for viroprofiler
Users that are interested in viroprofiler are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆58Updated this week
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 3 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 months ago
- Detection of NCLDV signatures in 'omic data☆35Updated last month
- MAG Circularization Method☆32Updated 3 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- strain-level analysis tools☆39Updated last year
- ☆44Updated last year
- ☆42Updated 4 years ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 7 months ago
- Kraken(2) database based on the GTDB project☆28Updated 7 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago