deng-lab / viroprofilerLinks
A containerized bioinformatics pipeline for viral metagenomic data analysis
☆37Updated last year
Alternatives and similar repositories for viroprofiler
Users that are interested in viroprofiler are comparing it to the libraries listed below
Sorting:
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- Discover and annotate the virome☆54Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- MAG Circularization Method☆32Updated last month
- Bacterial GWAS analysis☆46Updated last month
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- strain-level analysis tools☆39Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆26Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- ☆40Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated 2 months ago
- Gene-flank analysis tool☆34Updated 11 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year