bhattlab / phanta
Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
☆63Updated 2 months ago
Alternatives and similar repositories for phanta:
Users that are interested in phanta are comparing it to the libraries listed below
- ☆45Updated last year
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- KEGG Module Evaluation Tool☆28Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- Prophage Activity Estimator☆26Updated 9 months ago
- ☆26Updated 10 months ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last week
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☆28Updated last week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆54Updated this week
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- ☆41Updated 4 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Binning Virus Genomes from Metagenomes☆61Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆40Updated 10 months ago
- Build a map of genes present across a set of microbial genomes☆14Updated this week
- ☆50Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- ☆37Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- whole genome MLST analysis☆40Updated 9 months ago