bhattlab / phanta
Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
☆63Updated 3 weeks ago
Alternatives and similar repositories for phanta:
Users that are interested in phanta are comparing it to the libraries listed below
- ☆26Updated 11 months ago
- ☆45Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Unified Human Gut Virome Catalog☆28Updated 8 months ago
- CLI tool to annotate genes with KOfam☆78Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- ☆29Updated last month
- ☆41Updated 4 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- IslandPath standalone software☆31Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 9 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- KEGG Module Evaluation Tool☆29Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Prophage Activity Estimator☆26Updated 10 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- MAG Circularization Method☆33Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Bacterial GWAS analysis☆39Updated 3 weeks ago
- whole genome MLST analysis☆41Updated this week
- ☆37Updated last year