bhattlab / phanta
Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
☆60Updated last month
Related projects ⓘ
Alternatives and complementary repositories for phanta
- Unified Human Gut Virome Catalog☆27Updated 4 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆40Updated last week
- A hybrid assembly and MAG recovery pipeline (and more!)☆85Updated this week
- Automatic eukaryotic taxonomic classification☆28Updated last month
- A package to annotate protein sequences☆53Updated 4 months ago
- ☆43Updated last year
- Supporting code for uncultivated gut virus manuscript☆66Updated last year
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆39Updated 7 months ago
- CLI tool to annotate genes with KOfam☆72Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆31Updated last week
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆35Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆53Updated last year
- ☆25Updated 7 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆45Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆58Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- ☆42Updated 3 years ago
- Build a map of genes present across a set of microbial genomes☆12Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆39Updated 3 years ago
- Graph-based assembly phasing☆66Updated 2 weeks ago
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL