Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
☆75Dec 1, 2025Updated 6 months ago
Alternatives and similar repositories for phanta
Users that are interested in phanta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 weeks ago
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioinformatics program inStrain☆190Mar 12, 2026Updated 3 months ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆318Mar 29, 2026Updated 3 months ago
- PHANOTATE: a gene caller for phages.☆91Dec 2, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- fast phage annotation program☆214Jun 17, 2026Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Jun 23, 2026Updated last week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆102Apr 27, 2026Updated 2 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jun 9, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Virus Identification By iteRative ANnoTation☆197Apr 15, 2024Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 2 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆333Jun 3, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆254May 13, 2026Updated last month
- Discover and annotate the virome☆63Jun 10, 2026Updated 2 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated 2 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 6 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆91Dec 27, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆60May 24, 2026Updated last month
- Systematic search of all known anti-phage systems.☆173May 5, 2026Updated last month
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆312Feb 3, 2026Updated 4 months ago
- A listing of software, tools and databases useful for virome analysis☆80Jun 21, 2026Updated last week
- Phage-Host Interaction Search Tool☆32Jul 8, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last week
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Predict AMPs in (meta)genomes and peptides☆95Nov 24, 2025Updated 7 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Phage Annotation using Protein Structures☆167Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago