viralFlye pipeline
☆18Aug 12, 2024Updated last year
Alternatives and similar repositories for viralFlye
Users that are interested in viralFlye are comparing it to the libraries listed below
Sorting:
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Feb 26, 2026Updated last week
- ☆11Jul 3, 2022Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- ☆16Feb 23, 2026Updated last week
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Jun 4, 2025Updated 9 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- ☆13Dec 26, 2025Updated 2 months ago
- Construct a Physical Map from Linked Reads☆18Apr 5, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ☆30Sep 21, 2023Updated 2 years ago
- ☆33Jul 14, 2021Updated 4 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated last month
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- ☆18Apr 6, 2022Updated 3 years ago
- ☆18May 13, 2021Updated 4 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- ☆21Nov 17, 2022Updated 3 years ago
- A collection of genomics software tools written in Go (golang).☆86Updated this week
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- ☆13Dec 3, 2024Updated last year
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last week
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated last month