jtlovell / GENESPACELinks
☆228Updated 11 months ago
Alternatives and similar repositories for GENESPACE
Users that are interested in GENESPACE are comparing it to the libraries listed below
Sorting:
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- ☆223Updated 3 weeks ago
- Any Way to Show Multi genomic Synteny☆215Updated 5 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆211Updated 3 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆335Updated 8 months ago
- Version 5 of the CAFE phylogenetics software☆158Updated 10 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆189Updated last week
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 7 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆132Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Nanopore data assembler☆162Updated 3 years ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- Constructing a pangenome gene graph☆201Updated 4 months ago
- Yet another Hi-C scaffolding tool☆168Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆202Updated last month
- Foreign Contamination Screening caller scripts and documentation☆153Updated 9 months ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆230Updated 3 months ago
- A bioinformatics tool for working with modified bases☆238Updated last month
- Reference-free profiling of polyploid genomes☆137Updated 2 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆183Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 5 months ago