jtlovell / GENESPACE
☆199Updated last month
Alternatives and similar repositories for GENESPACE:
Users that are interested in GENESPACE are comparing it to the libraries listed below
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- ☆178Updated last month
- Earl Grey: A fully automated TE curation and annotation pipeline☆160Updated this week
- Any Way to Show Multi genomic Synteny☆177Updated 5 months ago
- A bioinformatics tool for working with modified bases☆175Updated 2 weeks ago
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- Version 5 of the CAFE phylogenetics software☆129Updated last month
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆95Updated 3 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆176Updated 2 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆246Updated last week
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆121Updated 4 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 7 months ago
- snipit: summarise snps relative to your reference sequence☆155Updated last month
- accurate LiftOver tool for new genome assemblies☆124Updated 7 months ago
- Yet another Hi-C scaffolding tool☆142Updated 4 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆208Updated 3 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆142Updated 6 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆317Updated 9 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆162Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆195Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- Constructing a pangenome gene graph☆183Updated 8 months ago
- oxford dot plots☆148Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆118Updated 2 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆173Updated 9 months ago