RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
☆174May 30, 2021Updated 4 years ago
Alternatives and similar repositories for RaGOO
Users that are interested in RaGOO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆213Jan 17, 2024Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆451Oct 20, 2025Updated 5 months ago
- Synteny and Rearrangement Identifier☆458Mar 17, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆78Dec 4, 2019Updated 6 years ago
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- Nanopore data assembler☆166Mar 27, 2022Updated 4 years ago
- haplotypic duplication identification tool☆279Oct 30, 2025Updated 5 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Jan 3, 2025Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆209Nov 18, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Extensive de-novo TE Annotator☆438Updated this week
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Mar 20, 2026Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆80Oct 12, 2018Updated 7 years ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated 11 months ago
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated last month
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Long Reads Annotation pipeline☆73Mar 31, 2022Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 7 months ago
- Fast and accurate de novo assembler for long reads☆401May 10, 2024Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- VGP repository for the genome assembly working group☆193Mar 31, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆897Apr 2, 2026Updated last week
- Structural Variant Identification Method using Genome Assemblies☆139Sep 16, 2022Updated 3 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year