RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
☆173May 30, 2021Updated 5 years ago
Alternatives and similar repositories for RaGOO
Users that are interested in RaGOO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated 3 weeks ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 4 months ago
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Nanopore data assembler☆171Mar 27, 2022Updated 4 years ago
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆81Oct 12, 2018Updated 8 years ago
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- Long Reads Annotation pipeline☆71Mar 31, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Jun 30, 2026Updated 4 months ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- A reference-assisted assembly tool for producing draft chromosome sequences.☆43Jun 24, 2024Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆305Sep 23, 2026Updated last month
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆359Jul 27, 2026Updated 3 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- software tools for haplotype assembly from sequence data☆234Feb 9, 2025Updated last year
- Fast genome analysis from unassembled short reads☆328Apr 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 6 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆251Sep 6, 2024Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆151Jun 23, 2026Updated 4 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆933Sep 19, 2026Updated last month