tjiangHIT / cuteSV
Long read based human genomic structural variation detection with cuteSV
☆254Updated last month
Alternatives and similar repositories for cuteSV:
Users that are interested in cuteSV are comparing it to the libraries listed below
- Filtering and trimming of long read sequencing data☆198Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆141Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆274Updated 4 months ago
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- Jasmine: SV Merging Across Samples☆203Updated 2 months ago
- k-mer based assembly evaluation☆302Updated 7 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆157Updated last year
- haplotypic duplication identification tool☆221Updated last year
- software tools for haplotype assembly from sequence data☆215Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆258Updated last month
- A minimap2 frontend for PacBio native data formats☆181Updated 2 months ago
- An overview of all nanopack tools☆233Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆203Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆192Updated 5 months ago
- Long read / genome alignment software☆274Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆218Updated 6 months ago
- Comparison of multiple long read datasets☆122Updated 2 months ago
- Toolset for SV simulation, comparison and filtering☆371Updated last year
- De-Novo Repeat Discovery Tool☆200Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- PASA software☆183Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆242Updated 3 months ago
- Tools for plotting methylation data in various ways☆140Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last month
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆196Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 9 months ago