Long read based human genomic structural variation detection with cuteSV
☆292Aug 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for cuteSV
Users that are interested in cuteSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variation caller using third generation sequencing☆677Updated this week
- Structural Variant Identification Method using Long Reads☆186Jun 29, 2021Updated 5 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated last month
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆389Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- Long read / genome alignment software☆330Dec 16, 2025Updated 8 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆428Jul 4, 2026Updated 2 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆413Aug 25, 2026Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆117Apr 9, 2025Updated last year
- ☆130Aug 24, 2026Updated last week
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- Toolkit for calling structural variants using short or long reads☆117Aug 21, 2026Updated 2 weeks ago
- Structural variant caller for real-time long-read sequencing data☆62Dec 1, 2022Updated 3 years ago
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 5 months ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated 2 months ago
- Fast and accurate de novo assembler for long reads☆406May 10, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆535Aug 24, 2026Updated last week
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Application of pan-genome for population☆121Oct 26, 2025Updated 10 months ago
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- Annotation and Ranking of Structural Variation☆311Aug 11, 2026Updated 3 weeks ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆243Dec 29, 2023Updated 2 years ago