gpertea / gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
☆375Updated last year
Related projects ⓘ
Alternatives and complementary repositories for gffread
- TransDecoder source☆276Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆253Updated 4 months ago
- Transcript assembly and quantification for RNA-Seq☆384Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆205Updated 4 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆364Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆530Updated 4 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆243Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆283Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆199Updated this week
- Eukaryotic Genome Annotation Pipeline☆322Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆572Updated 6 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆226Updated 2 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆257Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆213Updated 3 years ago
- 3D de novo assembly (3D DNA) pipeline☆207Updated 11 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆246Updated last month
- Mummer alignment tool☆466Updated this week
- SUPPA: Fast quantification of splicing and differential splicing☆262Updated 5 months ago
- parallel fastq-dump wrapper☆283Updated last year
- Genome browser and variant annotation☆282Updated 2 weeks ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆312Updated 3 weeks ago
- adapter trimmer for Oxford Nanopore reads☆340Updated 6 months ago
- ☆220Updated 5 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆294Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆122Updated 4 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated 3 weeks ago
- RNA-seq workflow using STAR and DESeq2☆327Updated 3 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆231Updated 2 weeks ago
- Read trimming tool for Illumina NGS data.☆127Updated 9 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆341Updated 2 years ago