gpertea / gffreadLinks
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
☆439Updated 9 months ago
Alternatives and similar repositories for gffread
Users that are interested in gffread are comparing it to the libraries listed below
Sorting:
- ☆268Updated last month
- Transcript assembly and quantification for RNA-Seq☆464Updated this week
- TransDecoder source☆298Updated last week
- An accurate GFF3/GTF lift over pipeline☆507Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆552Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆531Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline☆363Updated 3 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆241Updated 4 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆341Updated last week
- Fast genome-wide functional annotation through orthology assignment☆658Updated 3 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆277Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆426Updated 8 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆277Updated 8 months ago
- RNA-seq workflow using STAR and DESeq2☆346Updated last month
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last month
- This Snakemake pipeline implements the GATK best-practices workflow☆259Updated 2 years ago
- Mummer alignment tool☆526Updated 8 months ago
- Align proteins to genomes with splicing and frameshift☆380Updated 2 weeks ago
- GFF and GTF file manipulation and interconversion☆308Updated last year
- Download FASTQ files from SRA or ENA repositories.☆344Updated 3 months ago
- Genome annotation with AUGUSTUS☆317Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆437Updated 5 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆486Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆223Updated 3 months ago
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆432Updated 2 months ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Genome browser and variant annotation☆381Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago