ryanlayer / samplotLinks
Plot structural variant signals from many BAMs and CRAMs
☆557Updated last year
Alternatives and similar repositories for samplot
Users that are interested in samplot are comparing it to the libraries listed below
Sorting:
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆396Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆519Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆245Updated 3 weeks ago
- Structural variant toolkit for VCFs☆394Updated last month
- TransDecoder source☆301Updated 3 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆257Updated 3 months ago
- Toolset for SV simulation, comparison and filtering☆406Updated 2 years ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆330Updated 7 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 11 months ago
- Genome browser and variant annotation☆387Updated 2 months ago
- parallel fastq-dump wrapper☆301Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆450Updated last year
- ☆299Updated 3 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆499Updated 2 months ago
- Annotation and Ranking of Structural Variation☆278Updated 3 months ago
- Bayesian haplotype-based mutation calling☆322Updated last week
- Read-based phasing of genomic variants, also called haplotype assembly☆401Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆280Updated 7 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆349Updated last month
- Documentation for the ANNOVAR software☆245Updated 5 months ago
- Strelka2 germline and somatic small variant caller☆389Updated 4 years ago
- ☆283Updated 2 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated last week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated 3 weeks ago