ryanlayer / samplotLinks
Plot structural variant signals from many BAMs and CRAMs
☆543Updated 10 months ago
Alternatives and similar repositories for samplot
Users that are interested in samplot are comparing it to the libraries listed below
Sorting:
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆366Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Count bases in BAM/CRAM files☆317Updated 3 years ago
- Structural variant toolkit for VCFs☆357Updated 3 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆266Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆224Updated this week
- Annotation and Ranking of Structural Variation☆257Updated 2 months ago
- Genome browser and variant annotation☆304Updated last week
- TransDecoder source☆289Updated 8 months ago
- An overview of all nanopack tools☆252Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- Toolset for SV simulation, comparison and filtering☆379Updated last year
- An accurate GFF3/GTF lift over pipeline☆482Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆377Updated last year
- ☆276Updated 3 months ago
- Bayesian haplotype-based mutation calling☆311Updated 2 months ago
- Read trimming tool for Illumina NGS data.☆136Updated 10 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆256Updated 3 weeks ago
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago
- Structural variation caller using third generation sequencing☆593Updated last month
- Transcript assembly and quantification for RNA-Seq☆439Updated 3 weeks ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆301Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆251Updated 4 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆267Updated 5 months ago