Plot structural variant signals from many BAMs and CRAMs
☆567Jul 13, 2024Updated last year
Alternatives and similar repositories for samplot
Users that are interested in samplot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolset for SV simulation, comparison and filtering☆417Dec 1, 2023Updated 2 years ago
- Structural variant toolkit for VCFs☆410Mar 21, 2026Updated last month
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆848May 2, 2026Updated 2 weeks ago
- Annotation and Ranking of Structural Variation☆296May 12, 2026Updated last week
- Structural variation caller using third generation sequencing☆652May 7, 2026Updated last week
- Structural variation and indel detection by local assembly☆255Updated this week
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- Toolkit for calling structural variants using short or long reads☆115Apr 28, 2026Updated 3 weeks ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 2 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆402May 1, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆183Apr 12, 2024Updated 2 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆537Aug 1, 2023Updated 2 years ago
- A genome browser designed for complex structural variants and long reads.☆301Jun 6, 2025Updated 11 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆124Oct 9, 2025Updated 7 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated 11 months ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Phased assembly variant caller☆140Dec 4, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆515Updated this week
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated last week
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 3 months ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A list of interesting genome browser and genome visualization programs☆1,076Updated this week
- Read-based phasing of genomic variants, also called haplotype assembly☆416Dec 31, 2025Updated 4 months ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆678Mar 20, 2026Updated 2 months ago
- diploid SNV caller for error-prone reads☆210Apr 26, 2024Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆346Apr 7, 2025Updated last year
- Sequence-to-graph mapper and graph generator☆478Aug 11, 2025Updated 9 months ago
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago