Alternatives and similar repositories for samplot

Users that are interested in samplot are comparing it to the libraries listed below

• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆260Updated 2 years ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆274Updated 2 years ago
• igvteam / igv-reports
  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
  ☆393Updated last week
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆513Updated 2 years ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆386Updated last month
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆319Updated 3 years ago
• fritzsedlazeck / SURVIVOR
  Toolset for SV simulation, comparison and filtering
  ☆399Updated last year
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆328Updated 5 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆443Updated 10 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆282Updated 9 months ago
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆239Updated last week
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last month
• WGLab / doc-ANNOVAR
  Documentation for the ANNOVAR software
  ☆245Updated 3 months ago
• kcleal / gw
  Genome browser and variant annotation
  ☆384Updated 2 weeks ago
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆491Updated last week
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆299Updated 2 years ago
• Illumina / strelka
  Strelka2 germline and somatic small variant caller
  ☆387Updated 3 years ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆251Updated last month
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆279Updated 5 months ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆305Updated last year
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆263Updated last month
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆345Updated last week
• Illumina / manta
  Structural variant and indel caller for mapped sequencing data
  ☆449Updated last month
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆272Updated 2 years ago
• luntergroup / octopus
  Bayesian haplotype-based mutation calling
  ☆319Updated last month
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆250Updated 4 months ago
• dpryan79 / ChromosomeMappings
  This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
  ☆244Updated 2 years ago
• pcingola / SnpEff
  ☆292Updated 2 months ago
• usadellab / Trimmomatic
  ☆274Updated last month