Alternatives and similar repositories for drep

Users that are interested in drep are comparing it to the libraries listed below

• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆261Updated 8 months ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆219Updated last month
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆239Updated 2 years ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆251Updated 3 weeks ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆249Updated last year
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆307Updated 5 months ago
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆289Updated last week
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆275Updated this week
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆379Updated last month
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆211Updated last week
• wwood / CoverM
  Read alignment statistics for metagenomics
  ☆360Updated last week
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆329Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆359Updated last month
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆215Updated last month
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆347Updated last week
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆245Updated last year
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆316Updated 5 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆219Updated 4 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆217Updated this week
• bioinformatics-centre / kaiju
  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
  ☆287Updated 3 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆191Updated 2 weeks ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆379Updated last week
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆358Updated last year
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆348Updated 2 weeks ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆231Updated 2 years ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆200Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆318Updated 4 months ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆354Updated 3 years ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆153Updated 3 months ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆243Updated this week