Alternatives and similar repositories for drep

Users that are interested in drep are comparing it to the libraries listed below

• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆224Updated 2 years ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆248Updated 5 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆243Updated last year
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆320Updated 11 months ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆211Updated 3 weeks ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆329Updated last year
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆242Updated last year
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆298Updated 2 months ago
• wwood / CoverM
  Read alignment statistics for metagenomics
  ☆336Updated 2 weeks ago
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆277Updated this week
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆205Updated 2 years ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆235Updated this week
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆338Updated last year
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆371Updated 8 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆278Updated 6 months ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆223Updated 2 years ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆266Updated last week
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆309Updated 2 months ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆337Updated last week
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆188Updated 3 months ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆344Updated 3 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆201Updated 8 months ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆236Updated last month
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆161Updated last month
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆362Updated 3 years ago
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆205Updated 3 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆223Updated 4 months ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆365Updated last week
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆204Updated 9 months ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆402Updated last year