MrOlm / drepLinks
Rapid comparison and dereplication of genomes
☆302Updated last month
Alternatives and similar repositories for drep
Users that are interested in drep are comparing it to the libraries listed below
Sorting:
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- Bacterial ribosomal RNA predictor☆247Updated last year
- Scan contig files against PubMLST typing schemes☆238Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆311Updated 4 months ago
- An updated pipeline for pangenome investigation☆306Updated 4 months ago
- Read alignment statistics for metagenomics☆356Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆288Updated last week
- Build a partitioned pangenome graph from microbial genomes☆271Updated last week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆375Updated last month
- Assembly and binning of metagenomes☆241Updated last week
- quality filtering tool for long reads☆351Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆216Updated 2 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆211Updated last week
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- A tool to circularize genome assemblies☆243Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆215Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆230Updated 2 years ago
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆345Updated last year
- Synteny and Rearrangement Identifier☆396Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆416Updated last year
- geNomad: Identification of mobile genetic elements☆249Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆421Updated last week
- SortMeRNA: next-generation sequence filtering and alignment tool☆270Updated 6 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆285Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆532Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆191Updated 2 months ago