MrOlm / drep
Rapid comparison and dereplication of genomes
☆280Updated 3 months ago
Alternatives and similar repositories for drep:
Users that are interested in drep are comparing it to the libraries listed below
- Scan contig files against PubMLST typing schemes☆220Updated 2 years ago
- quality filtering tool for long reads☆325Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆244Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆317Updated 10 months ago
- Bacterial ribosomal RNA predictor☆238Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆221Updated 2 years ago
- An updated pipeline for pangenome investigation☆290Updated last month
- A tool to circularize genome assemblies☆239Updated 11 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆206Updated 4 months ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Synteny and Rearrangement Identifier☆371Updated this week
- Pan-genome wide association studies☆191Updated 10 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆185Updated last month
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆305Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆268Updated this week
- Read alignment statistics for metagenomics☆324Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆140Updated 5 months ago
- geNomad: Identification of mobile genetic elements☆225Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆332Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆363Updated 7 months ago
- Assembly and binning of metagenomes☆229Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆393Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline☆340Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆144Updated 2 weeks ago
- BSR-Based Allele Calling Algorithm☆141Updated 3 weeks ago
- A user-friendly workflow for phylogenomics☆209Updated this week
- Pilon is an automated genome assembly improvement and variant detection tool☆354Updated 2 years ago