tseemann / shovill
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
☆210Updated last year
Related projects: ⓘ
- A tool for generating consensus long-read assemblies for bacterial genomes☆304Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆192Updated last year
- Bacterial ribosomal RNA predictor☆218Updated last year
- An updated pipeline for pangenome investigation☆260Updated 5 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆186Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆257Updated 10 months ago
- quality filtering tool for long reads☆275Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆175Updated 7 months ago
- A tool to circularize genome assemblies☆229Updated 5 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆212Updated 10 months ago
- Rapid comparison and dereplication of genomes☆247Updated 3 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆168Updated 3 months ago
- Filtering and trimming of long read sequencing data☆184Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆340Updated 2 years ago
- ☆184Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆187Updated 3 weeks ago
- Genome Assembly and Annotation Service code☆199Updated 9 months ago
- BSR-Based Allele Calling Algorithm☆129Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆189Updated 8 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆219Updated last year
- Pan-genome wide association studies☆147Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆276Updated 3 months ago
- Fast and accurately polish the genome generated by long reads.☆205Updated 10 months ago
- De-Novo Repeat Discovery Tool☆185Updated 5 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆285Updated last month
- A user-friendly workflow for phylogenomics☆197Updated this week
- Synteny and Rearrangement Identifier☆322Updated last week
- Quality control for MinION sequencing data☆209Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆165Updated last week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆198Updated last year