ParBLiSS / FastANILinks
Fast Whole-Genome Similarity (ANI) Estimation
☆436Updated 3 months ago
Alternatives and similar repositories for FastANI
Users that are interested in FastANI are comparing it to the libraries listed below
Sorting:
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆395Updated 5 months ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- Rapid large-scale prokaryote pan genome analysis☆357Updated 2 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆359Updated this week
- Scan contig files against PubMLST typing schemes☆252Updated 3 years ago
- Bacterial ribosomal RNA predictor☆259Updated 2 years ago
- Rapid comparison and dereplication of genomes☆315Updated last week
- quality filtering tool for long reads☆374Updated 2 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆355Updated 3 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆322Updated 8 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆394Updated 3 weeks ago
- Genome assembly evaluation tool☆480Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆450Updated last year
- adapter trimmer for Oxford Nanopore reads☆375Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆430Updated 3 weeks ago
- Sequence correction provided by ONT Research☆486Updated 3 months ago
- Genome annotation with AUGUSTUS☆321Updated 3 months ago
- Mummer alignment tool☆535Updated 9 months ago
- Build a partitioned pangenome graph from microbial genomes☆285Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆447Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆371Updated 3 years ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆314Updated 6 months ago
- Read alignment statistics for metagenomics☆377Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆334Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆538Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆273Updated 11 months ago
- hybrid assembly pipeline for bacterial genomes☆625Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆567Updated 3 weeks ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆295Updated 6 months ago
- Plotting scripts for long read sequencing data☆507Updated 2 months ago