DerrickWood / kraken2
The second version of the Kraken taxonomic sequence classification system
☆726Updated this week
Related projects ⓘ
Alternatives and complementary repositories for kraken2
- De novo assembler for single molecule sequencing reads using repeat graphs☆789Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆568Updated 5 months ago
- Rapid prokaryotic genome annotation☆836Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆566Updated 3 months ago
- A complete pipeline for metagenomic analysis☆380Updated this week
- Phylogenetic orthology inference for comparative genomics☆704Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆319Updated 11 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆293Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆442Updated this week
- A quality control analysis tool for high throughput sequencing data☆445Updated 10 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆396Updated last year
- Gene cluster comparison figure generator☆529Updated last month
- SPAdes Genome Assembler☆756Updated this week
- Genome assembly evaluation tool☆404Updated 4 months ago
- Rapid large-scale prokaryote pan genome analysis☆323Updated 2 years ago
- ☆220Updated 5 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆367Updated 10 months ago
- Transcript assembly and quantification for RNA-Seq☆378Updated this week
- 🌈 Interactive analysis of metagenomics data☆389Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆413Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆313Updated last week
- Official home of genome aligner based upon notion of Cactus graphs☆520Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆757Updated 3 weeks ago
- Rapid haploid variant calling and core genome alignment☆474Updated 3 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆404Updated last week
- Sequence correction provided by ONT Research☆420Updated 3 weeks ago
- A single molecule sequence assembler for genomes large and small.☆658Updated last month
- The next version of bwa-mem☆721Updated 3 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆302Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆586Updated last year