DerrickWood / kraken2Links
The second version of the Kraken taxonomic sequence classification system
☆856Updated 3 weeks ago
Alternatives and similar repositories for kraken2
Users that are interested in kraken2 are comparing it to the libraries listed below
Sorting:
- Rapid prokaryotic genome annotation☆946Updated 2 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆884Updated 7 months ago
- Fast genome-wide functional annotation through orthology assignment☆682Updated 6 months ago
- Phylogenetic orthology inference for comparative genomics☆822Updated 5 months ago
- hybrid assembly pipeline for bacterial genomes☆628Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆582Updated 3 weeks ago
- SPAdes Genome Assembler☆887Updated 2 weeks ago
- Rapid haploid variant calling and core genome alignment☆557Updated 2 weeks ago
- Genome assembly evaluation tool☆488Updated last year
- A quality control analysis tool for high throughput sequencing data☆561Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆882Updated last week
- Mass screening of contigs for antimicrobial and virulence genes☆466Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆440Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆452Updated 2 years ago
- Gene cluster comparison figure generator☆627Updated last week
- Mummer alignment tool☆542Updated 10 months ago
- Plotting scripts for long read sequencing data☆521Updated 3 weeks ago
- The next version of bwa-mem☆804Updated 2 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆711Updated 9 months ago
- ☆282Updated 2 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆657Updated 3 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆637Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆492Updated 2 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆549Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆442Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆546Updated last year
- A single molecule sequence assembler for genomes large and small.☆694Updated last month
- 🌈 Interactive analysis of metagenomics data☆438Updated 3 months ago
- Bioinformatics code libraries and scripts☆552Updated 5 months ago
- Prodigal Gene Prediction Software☆523Updated last year