gmarcais / JellyfishLinks
A fast multi-threaded k-mer counter
☆526Updated last year
Alternatives and similar repositories for Jellyfish
Users that are interested in Jellyfish are comparing it to the libraries listed below
Sorting:
- Mummer alignment tool☆542Updated 10 months ago
- Genome assembly evaluation tool☆488Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆637Updated 2 weeks ago
- Structural variation caller using third generation sequencing☆629Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆657Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆711Updated 9 months ago
- Data and analysis for NA12878 genome on nanopore☆396Updated 3 years ago
- Fast and frugal disk based k-mer counter☆317Updated last month
- Fast genome and metagenome distance estimation using MinHash☆428Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆628Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆499Updated last month
- adapter trimmer for Oxford Nanopore reads☆378Updated last year
- Sequence-to-graph mapper and graph generator☆464Updated 4 months ago
- Plotting scripts for long read sequencing data☆521Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆373Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆442Updated 2 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆518Updated 3 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆546Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆884Updated 7 months ago
- A single molecule sequence assembler for genomes large and small.☆694Updated last month
- Assemble large genomes using short reads☆329Updated 9 months ago
- the pangenome graph builder☆471Updated 3 weeks ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆347Updated 5 months ago
- Sequence correction provided by ONT Research☆489Updated 3 weeks ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆445Updated 2 weeks ago
- ☆282Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆449Updated last year
- An accurate GFF3/GTF lift over pipeline☆517Updated 2 years ago