gmarcais / Jellyfish
A fast multi-threaded k-mer counter
☆480Updated 9 months ago
Alternatives and similar repositories for Jellyfish:
Users that are interested in Jellyfish are comparing it to the libraries listed below
- Genome assembly evaluation tool☆416Updated 2 months ago
- Fast and frugal disk based k-mer counter☆281Updated last month
- Mummer alignment tool☆477Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆469Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆297Updated 5 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆485Updated 11 months ago
- Transcript assembly and quantification for RNA-Seq☆399Updated last week
- Structural variation caller using third generation sequencing☆573Updated this week
- Fast genome-wide functional annotation through orthology assignment☆585Updated 8 months ago
- TransDecoder source☆281Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆578Updated 5 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆596Updated 2 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆379Updated 2 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆329Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆454Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆802Updated 4 months ago
- Data and analysis for NA12878 genome on nanopore☆376Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆374Updated 3 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆567Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆345Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆390Updated 3 weeks ago
- Sequence correction provided by ONT Research☆433Updated 3 months ago
- Fast and accurate de novo assembler for long reads☆376Updated 8 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆309Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆356Updated 4 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆540Updated this week
- Eukaryotic Genome Annotation Pipeline☆329Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆535Updated 6 months ago
- ☆227Updated 7 months ago
- Classifier for metagenomic sequences☆253Updated 2 months ago