gmarcais / JellyfishLinks
A fast multi-threaded k-mer counter
☆512Updated last year
Alternatives and similar repositories for Jellyfish
Users that are interested in Jellyfish are comparing it to the libraries listed below
Sorting:
- Mummer alignment tool☆524Updated 7 months ago
- Fast and frugal disk based k-mer counter☆300Updated 2 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆679Updated 6 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆633Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆613Updated last year
- Structural variation caller using third generation sequencing☆615Updated 3 weeks ago
- Genome assembly evaluation tool☆464Updated 10 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆609Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆529Updated last year
- Plotting scripts for long read sequencing data☆502Updated 3 weeks ago
- Sequence correction provided by ONT Research☆482Updated last month
- A single molecule sequence assembler for genomes large and small.☆689Updated 2 weeks ago
- Fast genome and metagenome distance estimation using MinHash☆418Updated last year
- Sequence-to-graph mapper and graph generator☆456Updated last month
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆340Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆872Updated 4 months ago
- adapter trimmer for Oxford Nanopore reads☆372Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆423Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆361Updated 2 months ago
- Assemble large genomes using short reads☆322Updated 5 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆486Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆428Updated last month
- Data and analysis for NA12878 genome on nanopore☆396Updated 2 years ago
- Genome annotation with AUGUSTUS☆317Updated last month
- Next generation sequencing reads de novo assembler.☆237Updated this week
- An accurate GFF3/GTF lift over pipeline☆504Updated 2 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆294Updated 7 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆510Updated last week
- the pangenome graph builder☆449Updated last month