gmarcais / JellyfishLinks
A fast multi-threaded k-mer counter
☆501Updated last year
Alternatives and similar repositories for Jellyfish
Users that are interested in Jellyfish are comparing it to the libraries listed below
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆832Updated last month
- Structural variation caller using third generation sequencing☆593Updated last month
- ☆248Updated last year
- Transcript assembly and quantification for RNA-Seq☆439Updated 3 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆622Updated last year
- hybrid assembly pipeline for bacterial genomes☆599Updated 10 months ago
- Mummer alignment tool☆510Updated 3 months ago
- Fast and frugal disk based k-mer counter☆292Updated 6 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆470Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆576Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆508Updated last year
- ☆276Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆626Updated 2 months ago
- TransDecoder source☆289Updated 8 months ago
- Genome assembly evaluation tool☆439Updated 6 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆409Updated 4 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆338Updated this week
- Sequence correction provided by ONT Research☆458Updated last week
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 6 months ago
- Rapid large-scale prokaryote pan genome analysis☆346Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆514Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆416Updated 5 months ago
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 10 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆617Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- Fast and accurate de novo assembler for long reads☆387Updated last year
- Next generation sequencing reads de novo assembler.☆232Updated last year
- Plotting scripts for long read sequencing data☆476Updated 3 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆340Updated last year