Prodigal Gene Prediction Software
☆552Jan 23, 2024Updated 2 years ago
Alternatives and similar repositories for Prodigal
Users that are interested in Prodigal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid prokaryotic genome annotation☆993Jan 6, 2026Updated 7 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 6 months ago
- Fast genome-wide functional annotation through orthology assignment☆775Aug 13, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆354Jul 16, 2026Updated last month
- Ultra-fast and memory-efficient (meta-)genome assembler☆722Oct 28, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆620May 20, 2026Updated 3 months ago
- SPAdes Genome Assembler☆956Jun 16, 2026Updated 2 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,317Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- Microbial RNA annotation☆309Apr 12, 2026Updated 4 months ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆476Jul 28, 2023Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast Whole-Genome Similarity (ANI) Estimation☆479Dec 16, 2025Updated 8 months ago
- The second version of the Kraken taxonomic sequence classification system☆935Updated this week
- Genome assembly evaluation tool☆520Jun 10, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆671Aug 7, 2026Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- geNomad: Identification of mobile genetic elements☆329Mar 29, 2026Updated 5 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆429May 20, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast genome and metagenome distance estimation using MinHash☆451Sep 19, 2025Updated 11 months ago
- Automatically exported from code.google.com/p/cdhit☆731Oct 11, 2022Updated 3 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Jul 29, 2026Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆358Mar 16, 2026Updated 5 months ago
- Versatile open-source tool for microbiome analysis☆757Updated this week
- Mummer alignment tool☆574Feb 4, 2025Updated last year
- Mining CRISPRs in Environmental Datasets☆125Feb 10, 2023Updated 3 years ago
- Classifier for metagenomic sequences☆279Apr 15, 2026Updated 4 months ago
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 10 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,133Updated this week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆308Jun 9, 2026Updated 2 months ago
- Interactively explore metagenomes and more from a web browser.☆504Dec 22, 2021Updated 4 years ago
- Virus Identification By iteRative ANnoTation☆203Apr 15, 2024Updated 2 years ago