Prodigal Gene Prediction Software
☆542Jan 23, 2024Updated 2 years ago
Alternatives and similar repositories for Prodigal
Users that are interested in Prodigal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid prokaryotic genome annotation☆986Jan 6, 2026Updated 5 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆743May 22, 2026Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆346Nov 10, 2025Updated 7 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆606May 20, 2026Updated 3 weeks ago
- SPAdes Genome Assembler☆942Updated this week
- Accelerated BLAST compatible local sequence aligner.☆1,301Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- Microbial RNA annotation☆296Apr 12, 2026Updated 2 months ago
- DAS Tool☆174May 2, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆399Apr 8, 2026Updated 2 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast Whole-Genome Similarity (ANI) Estimation☆463Dec 16, 2025Updated 5 months ago
- The second version of the Kraken taxonomic sequence classification system☆912Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆650May 15, 2026Updated 3 weeks ago
- Genome assembly evaluation tool☆513Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆291Nov 28, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆421May 20, 2026Updated 3 weeks ago
- Fast genome and metagenome distance estimation using MinHash☆444Sep 19, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automatically exported from code.google.com/p/cdhit☆730Oct 11, 2022Updated 3 years ago
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆231Apr 1, 2026Updated 2 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆353Mar 16, 2026Updated 2 months ago
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- Versatile open-source tool for microbiome analysis☆748May 4, 2026Updated last month
- Mining CRISPRs in Environmental Datasets☆124Feb 10, 2023Updated 3 years ago
- Classifier for metagenomic sequences☆274Apr 15, 2026Updated last month
- Clustering cONtigs with COverage and ComposiTion☆139Mar 6, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 7 months ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,078Updated this week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Updated this week
- Interactively explore metagenomes and more from a web browser.☆501Dec 22, 2021Updated 4 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆177Updated this week