sanger-pathogens / Roary
Rapid large-scale prokaryote pan genome analysis
☆345Updated 3 years ago
Alternatives and similar repositories for Roary
Users that are interested in Roary are comparing it to the libraries listed below
Sorting:
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆371Updated 8 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆508Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆362Updated 3 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆309Updated 2 months ago
- Rapid comparison and dereplication of genomes☆290Updated last month
- Eukaryotic Genome Annotation Pipeline☆348Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆403Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆338Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆340Updated last year
- Scan contig files against PubMLST typing schemes☆225Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆416Updated last year
- Bacterial ribosomal RNA predictor☆243Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆248Updated 5 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆422Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆223Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆266Updated last week
- A tool to circularize genome assemblies☆242Updated last year
- quality filtering tool for long reads☆329Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆366Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆388Updated last week
- Genome assembly evaluation tool☆434Updated 6 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆507Updated last year
- A complete pipeline for metagenomic analysis☆409Updated 2 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆339Updated this week
- An updated pipeline for pangenome investigation☆298Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆402Updated last year
- Sequence correction provided by ONT Research☆453Updated 7 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆277Updated this week