sanger-pathogens / RoaryLinks
Rapid large-scale prokaryote pan genome analysis
☆354Updated 3 years ago
Alternatives and similar repositories for Roary
Users that are interested in Roary are comparing it to the libraries listed below
Sorting:
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆379Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆347Updated last week
- Eukaryotic Genome Annotation Pipeline☆359Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆432Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆379Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆329Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆434Updated 2 years ago
- Bacterial ribosomal RNA predictor☆249Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆345Updated 2 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆261Updated 8 months ago
- Genome assembly evaluation tool☆451Updated 8 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Build a partitioned pangenome graph from microbial genomes☆275Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆422Updated 2 weeks ago
- Scan contig files against PubMLST typing schemes☆239Updated 2 years ago
- quality filtering tool for long reads☆358Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆419Updated 6 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆316Updated 5 months ago
- Assembly and binning of metagenomes☆242Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆422Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆304Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆540Updated last month
- adapter trimmer for Oxford Nanopore reads☆368Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆358Updated last month
- Rapid haploid variant calling and core genome alignment☆534Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆520Updated last year
- An updated pipeline for pangenome investigation☆307Updated 5 months ago
- A tool to circularize genome assemblies☆244Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆287Updated 3 months ago