Alternatives and similar repositories for Roary:

Users that are interested in Roary are comparing it to the libraries listed below

• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆299Updated 6 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆359Updated 4 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆474Updated this week
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆314Updated 8 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆330Updated last week
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆232Updated last year
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆385Updated last year
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆412Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆345Updated 2 years ago
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆274Updated last month
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆374Updated last week
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆326Updated last year
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆326Updated last week
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆210Updated 2 years ago
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆409Updated 4 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆215Updated 3 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆310Updated last year
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆235Updated 9 months ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆392Updated this week
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆251Updated 3 weeks ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆348Updated 8 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆486Updated 11 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆435Updated 3 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆579Updated 6 months ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆345Updated last month
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆587Updated 8 months ago
• bioinformatics-centre / kaiju
  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
  ☆276Updated 2 weeks ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆234Updated 2 months ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆248Updated 4 years ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆493Updated 6 months ago