Accelerated BLAST compatible local sequence aligner.
☆1,308Jun 27, 2026Updated this week
Alternatives and similar repositories for diamond
Users that are interested in diamond are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast genome-wide functional annotation through orthology assignment☆749May 22, 2026Updated last month
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,090Jun 21, 2026Updated last week
- SPAdes Genome Assembler☆947Jun 16, 2026Updated 2 weeks ago
- Prodigal Gene Prediction Software☆542Jan 23, 2024Updated 2 years ago
- Rapid prokaryotic genome annotation☆985Jan 6, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 8 months ago
- Automatically exported from code.google.com/p/cdhit☆733Oct 11, 2022Updated 3 years ago
- Phylogenetic orthology inference for comparative genomics☆858Jul 15, 2025Updated 11 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆468Dec 16, 2025Updated 6 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆609May 20, 2026Updated last month
- The second version of the Kraken taxonomic sequence classification system☆913Jun 24, 2026Updated last week
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,384Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- hybrid assembly pipeline for bacterial genomes☆645Jul 25, 2024Updated last year
- Genome assembly evaluation tool☆514Jun 10, 2026Updated 3 weeks ago
- Interactively explore metagenomes and more from a web browser.☆501Dec 22, 2021Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,204May 19, 2026Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,542Jun 1, 2025Updated last year
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,573Jun 24, 2026Updated last week
- Fast genome and metagenome distance estimation using MinHash☆445Sep 19, 2025Updated 9 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,079Apr 7, 2026Updated 2 months ago
- Versatile open-source tool for microbiome analysis☆750Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- HMMER: biological sequence analysis using profile HMMs☆416May 30, 2026Updated last month
- Read alignment statistics for metagenomics☆399Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆894Apr 23, 2026Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆656May 15, 2026Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆413Jun 8, 2026Updated 3 weeks ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆548Jun 22, 2026Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Microbial RNA annotation☆300Apr 12, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rapid comparison and dereplication of genomes☆347Nov 10, 2025Updated 7 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Jun 9, 2026Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆382Apr 10, 2022Updated 4 years ago
- Classifier for metagenomic sequences☆275Apr 15, 2026Updated 2 months ago
- The next version of bwa-mem☆844Oct 15, 2025Updated 8 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 10 months ago
- Eukaryotic Genome Annotation Pipeline☆389Updated this week