bbuchfink / diamondLinks
Accelerated BLAST compatible local sequence aligner.
☆1,176Updated 3 weeks ago
Alternatives and similar repositories for diamond
Users that are interested in diamond are comparing it to the libraries listed below
Sorting:
- Rapid prokaryotic genome annotation☆930Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,026Updated last month
- Automatically exported from code.google.com/p/cdhit☆693Updated 2 years ago
- SPAdes Genome Assembler☆862Updated 2 weeks ago
- Prodigal Gene Prediction Software☆498Updated last year
- Phylogenetic orthology inference for comparative genomics☆790Updated last month
- Fast genome-wide functional annotation through orthology assignment☆647Updated 2 months ago
- Gene cluster comparison figure generator☆606Updated 9 months ago
- A fast and sensitive gapped read aligner☆737Updated 8 months ago
- SRA Tools☆1,255Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆866Updated 6 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,487Updated 3 months ago
- Bioinformatics code libraries and scripts☆543Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆866Updated 4 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,779Updated 2 weeks ago
- Genome-scale protein function classification☆343Updated 3 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆817Updated last month
- Python library to facilitate genome assembly, annotation, and comparative genomics☆846Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆545Updated this week
- A list of interesting genome browser and genome visualization programs☆1,004Updated last week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,089Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,350Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,456Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,163Updated last month
- Versatile open-source tool for microbiome analysis☆714Updated last week
- A quality control analysis tool for high throughput sequencing data☆526Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomes☆609Updated last year
- Oxford Nanopore's Basecaller☆718Updated 3 weeks ago
- The next version of bwa-mem☆777Updated 2 months ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆434Updated 2 weeks ago