Alternatives and similar repositories for diamond

Users that are interested in diamond are comparing it to the libraries listed below

• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆717Updated 3 years ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆949Updated 2 weeks ago
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,055Updated 5 months ago
• ablab / spades
  SPAdes Genome Assembler
  ☆898Updated last week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆687Updated 7 months ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆823Updated 6 months ago
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆524Updated last year
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆861Updated 2 weeks ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆631Updated 3 weeks ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆362Updated this week
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆889Updated 8 months ago
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆880Updated 11 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆862Updated last year
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆883Updated 3 weeks ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆555Updated 5 months ago
• shenwei356 / seqkit
  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
  ☆1,498Updated last week
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,518Updated 7 months ago
• BenLangmead / bowtie2
  A fast and sensitive gapped read aligner
  ☆763Updated last month
• nanoporetech / dorado
  Oxford Nanopore's Basecaller
  ☆785Updated last week
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆522Updated 4 months ago
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆565Updated 2 weeks ago
• bwa-mem2 / bwa-mem2
  The next version of bwa-mem
  ☆807Updated 3 months ago
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆1,042Updated this week
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆631Updated last year
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,408Updated this week
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆591Updated last week
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆663Updated 3 years ago
• torognes / vsearch
  Versatile open-source tool for microbiome analysis
  ☆731Updated last week
• ncbi / sra-tools
  SRA Tools
  ☆1,292Updated this week
• soedinglab / MMseqs2
  MMseqs2: ultra fast and sensitive search and clustering suite
  ☆1,948Updated last month