wdecoster / nanoQCLinks
Quality control tools for nanopore sequencing data
☆111Updated last year
Alternatives and similar repositories for nanoQC
Users that are interested in nanoQC are comparing it to the libraries listed below
Sorting:
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆128Updated last month
- Research release basecalling models and configurations☆115Updated 5 months ago
- Comparison of multiple long read datasets☆146Updated last month
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 2 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆206Updated 3 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆147Updated 3 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆139Updated 3 months ago
- source code for EVM☆118Updated 11 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Nanopore data assembler☆161Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- Dfam Transposable Element Tools Docker container.☆100Updated last month
- Hierarchical Alignment Format☆172Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆160Updated 2 years ago
- Long read aligner☆115Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- Plotting tools for nanopore methylation data☆93Updated 3 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- Python programs for processing GFF3 files☆101Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 3 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆95Updated last year
- Yet another k-mer analyzer☆149Updated 3 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago