Quality control tools for nanopore sequencing data
☆114Oct 26, 2024Updated last year
Alternatives and similar repositories for nanoQC
Users that are interested in nanoQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison of multiple long read datasets☆181Aug 3, 2026Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Create statistic summary of an Oxford Nanopore read dataset☆139Nov 4, 2022Updated 3 years ago
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- Plotting scripts for long read sequencing data☆560Sep 5, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quality control for MinION sequencing data☆221Mar 17, 2026Updated 6 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆188Mar 25, 2026Updated 5 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- quality filtering tool for long reads☆416Sep 17, 2025Updated last year
- An overview of all nanopack tools☆291Jun 2, 2023Updated 3 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆190Jul 21, 2026Updated 2 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆172Mar 25, 2026Updated 5 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆120Aug 26, 2026Updated 3 weeks ago
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated 2 years ago
- MUMmer for HPC☆18Jan 7, 2013Updated 13 years ago
- Long read production pipelines☆152Updated this week
- Plotting tools for nanopore methylation data☆96Sep 11, 2026Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- ☆262Sep 13, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Structural variation caller using third generation sequencing☆680Sep 10, 2026Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆230Sep 11, 2026Updated last week
- a long read simulator that can imitate many types of read problems☆302Jul 24, 2026Updated last month
- Long read based human genomic structural variation detection with cuteSV☆293Aug 21, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆109Jan 17, 2026Updated 8 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆188Apr 12, 2023Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆389Apr 10, 2022Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆289Jul 7, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Signal-level algorithms for MinION data☆603Aug 5, 2023Updated 3 years ago
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆314Updated this week
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 3 months ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year