Benson-Genomics-Lab / TRFLinks
Tandem Repeats Finder: a program to analyze DNA sequences
☆172Updated 2 years ago
Alternatives and similar repositories for TRF
Users that are interested in TRF are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- Fast and accurately polish the genome generated by long reads.☆225Updated 4 months ago
- Jasmine: SV Merging Across Samples☆215Updated 5 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆150Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆204Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆227Updated 9 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆167Updated last year
- accurate LiftOver tool for new genome assemblies☆126Updated 9 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆149Updated 2 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆188Updated 2 weeks ago
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- Any Way to Show Multi genomic Synteny☆189Updated last month
- ☆94Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆260Updated 3 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆136Updated this week
- De-Novo Repeat Discovery Tool☆214Updated last month
- Pangenome-based genome inference☆127Updated last month
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- Earl Grey: A fully automated TE curation and annotation pipeline☆170Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Nanopore data assembler☆156Updated 3 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Hierarchical Alignment Format☆168Updated 5 months ago
- PASA software☆188Updated 3 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆278Updated 7 months ago