Alternatives and similar repositories for nanomonsv

Users that are interested in nanomonsv are comparing it to the libraries listed below

• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆115Updated 8 months ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆114Updated last year
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆95Updated 4 months ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆75Updated last week
• human-pangenomics / hpp_pangenome_resources
  ☆124Updated 2 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆152Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 2 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆111Updated last month
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆128Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆116Updated 6 months ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆79Updated last year
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆131Updated 2 months ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆80Updated 7 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated last month
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆87Updated 2 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆83Updated last week
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆70Updated 3 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆58Updated 2 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 5 years ago
• marbl / HG002
  A complete diploid human genome
  ☆137Updated last month
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 6 months ago
• epi2me-labs / modbam2bed
  ☆51Updated last month
• genome-in-a-bottle / genome-stratifications
  Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…
  ☆82Updated 3 years ago
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆100Updated last month
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago