SV detection tool for nanopore sequence reads
☆97Mar 25, 2026Updated 2 months ago
Alternatives and similar repositories for nanomonsv
Users that are interested in nanomonsv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- structure detection program☆18Nov 20, 2024Updated last year
- Somatic structural variant caller for long-read data☆91Jun 2, 2026Updated 2 weeks ago
- Long read based human genomic structural variation detection with cuteSV☆289Mar 26, 2026Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tandem repeat expansion detection or genotyping from long-read alignments☆161Mar 25, 2026Updated 2 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆108May 30, 2026Updated 2 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆369Jun 9, 2026Updated last week
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆79Jun 5, 2026Updated last week
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Apr 16, 2026Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆172Jun 8, 2026Updated last week
- ☆129May 4, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 2 months ago
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Toolkit for calling structural variants using short or long reads☆115Jun 8, 2026Updated last week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆76Nov 4, 2025Updated 7 months ago
- diploid SNV caller for error-prone reads☆211Apr 26, 2024Updated 2 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆418Dec 31, 2025Updated 5 months ago
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆124Apr 17, 2026Updated 2 months ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 11 months ago
- Structural variant caller for low-depth long-read sequencing data☆49Feb 5, 2026Updated 4 months ago
- Kmer Analysis of Pileups for Genotyping☆40Mar 6, 2026Updated 3 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Jasmine: SV Merging Across Samples☆253Dec 20, 2024Updated last year
- Annotation and Ranking of Structural Variation☆300Jun 9, 2026Updated last week
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 3 years ago
- Phased assembly variant caller☆141Dec 4, 2024Updated last year
- Structural variation caller using third generation sequencing☆663May 18, 2026Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 7 months ago
- ☆11Dec 9, 2022Updated 3 years ago