Structural variant caller for low-depth long-read sequencing data
☆49Feb 5, 2026Updated 5 months ago
Alternatives and similar repositories for nanovar
Users that are interested in nanovar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 3 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Oct 25, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 5 months ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- ☆129Updated this week
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆383Jul 9, 2026Updated 2 weeks ago
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last week
- ☆13Jan 23, 2020Updated 6 years ago
- Long read based human genomic structural variation detection with cuteSV☆291Jul 12, 2026Updated 2 weeks ago
- Structural variation caller using third generation sequencing☆673Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Read-based phasing of genomic variants, also called haplotype assembly☆423Jul 4, 2026Updated 3 weeks ago
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 4 months ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆31Updated this week
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Annotation and Ranking of Structural Variation☆305Jun 19, 2026Updated last month
- ☆17Jan 15, 2025Updated last year
- Structural variant toolkit for VCFs☆420May 22, 2026Updated 2 months ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- Third-generation fusion gene detection☆13Jul 25, 2023Updated 3 years ago