cytham / nanovar
Structural variant caller for low-depth long-read sequencing data
☆47Updated 3 weeks ago
Alternatives and similar repositories for nanovar:
Users that are interested in nanovar are comparing it to the libraries listed below
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated last month
- WDL workflows for variant calling and assembly using ONT☆30Updated this week
- SV genotyping with long reads☆40Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Algorithm to detect germline and de novo transposon insertions☆26Updated 9 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- ☆79Updated 8 months ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆37Updated 2 weeks ago
- ☆48Updated 7 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ☆34Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 3 years ago
- ☆29Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 7 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆35Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago